Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4974 ATGAAGGTACGTTCTGAAAGGGGAAGAACGAAAGTAGTGATTAGGCATTTACCTCCTTCACTAACTGAATCCGATCTCCTTCAACACATCGATAACCGCTTCGCTTCTCGCTACAACTGGTTCTCTTTCCGTCCCGGCAACACCAGTCACAAGAATGAAAGGTATGCTAGAGCCTATATAGACTTCAATTCTCCCGATGATGTTTTGGACTTTGCTGACTTGTTCAATGGACATGTTTTTGTTAACCAAAAAGGTGTCCAGCATAAAGCAGTAGTTGAGTATGCACCTTCTCAGCGTGTTCCAAAGAAAACTACCAAAAAGGATGGCCGCCAAGGGACTATATATAAAGATCCAGACTATCTCGAGTTCCTCAAACTCATCGCAAAGTCTCAGGAACATCTTCCTAGTGCAGAAATACAATTGGAAAGAAAAGAAGCTGAGCAAGCTGGGGCTAGCAAGGAACCACCTATCGTCACACCCCTGATGGAATATGTTCGTCAGAAACGTGCTGTTGACAGTGGTCTACTGGTTTCATCGGCGGCAACAAGAGTTGGCAGAAGAGCCAGAGCTGCTCTGCCCTGCAAGCCTGGGCCAGGTAATACCAGACGAGCATCTGAAAAGAAAAAGTATGTTCAGAAGGACAATATCAAGAATGCTAATCGGAAAGACTCGAGAGACAAATCAGCCTTTACTGTGGTCCCCAGGCGCGAGGATCAGTCTGCTGAATCAAGTATAAAAGGAATTTATGAAATTGACTCTTTTGTGATTGATGAATATCCAGTGCATGGTATTGAAGGTTCCATCTCTGGAATACCGCTGACTTCTGACTCAGGAAAGAAAAAAATCCTTCTTCTGAAAGGAAAACAGCGGGAAACTCCCAAAGCCACCGAAGGCATGGTAAAACAGCAAAATGCCCAATCTGCAAATTCACCCATTTCATCTACTTCAAAACAGAACCAAAGGCGTGAAGCCGGTGGAAGATTGATTAGGAGCATACTTCTAAATAATGAATCTCGACAAAGTCAATCTACATCTGCTGCACAACATAAGATTCAAATCTTAACTTCTGAGAATGGGAAGCGGCCACCTCGTCCTTTTGGCTCAAGGTCTGGGTTAAGTGATCAAGTGTCTAATCATGATGCTGGGCAAGTTAATTCTGAAGGGCATTCTAAAAGGGATTTGGATGAAAAGTTTGTAAGGAGAGATTTGCATGGTTTGAGTATTGCTGATAAAACGGAAAAACGTACTAGAAACAAGGACAGGCCTGATCGTGGTGTCTGGACACCTCTTCGCCGTTCTGATTCTTCACATAGTATTGAGCACTCATCATCCTCAGTGGCACAGCCTACACCGTCAAATCCTGAATCAGTTGAAGGGGAAGTAAAAGAAAATGTTTATTCAGGAAACAGGAGTGGGGAATTCTCAGCTTCTGCAGGTGGACGTAGCAGTTCCTTTGTTGAGAATGGTTCACAAAGAATTTTTACTCGCCGCGGGGCTCCCTATATAGCGAAGGATGATGGTGCAGTCAGTTTGAATGAAGGGAAACTTTCAAAGAAAGGTGTTGTTGGGCATAGTACTCATGAGAAACAAGTTTGGGTTCAGAAATCATCTTCAGATAATGGACACTTGGAGGAATTAATGGAATGTGCAATGAAGCATCGCCGGAGAAGCTGTGTTCGGTCATCAGCACCACCGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGATTCCAAACATTTTATGAAAGCCATACTTCCTCCACCCTTTCATTCCAAACAAATTAGAATCCCCGATGAGTTTATAACAAGATTTGGAAATGAACTCAGTAATGTGGCTAAGATTACTGTTCCCGATGGTCGTCGTCAATGGAATATGGAACTCAAGAAATGTGGCCGCGACGTTTTCCTTTGCAACAAATGGCAAGAGTTTGCAGAATACTATTCTATCAGTTATGGTTGTTATTTAGATTTCAAGTATGAAGGGAATTCAGAGTTTAATGTTGTTATATATGATACAACTTCTCTTGAAATTTCTTATCCATCCAAAACTCCAAGTACTAATGGAGAATCAAACACAAAAGATACTGCCAATGAATGCAACCCAAAAAACCCTTCTTTTCGTTCAAAATACATGAAGGCTGCACGGGGCCCATATGTGTATGTTCCTTTTGAATTTGCTGCAGAGTATCTGAAGCTAAAGGTTCCATTCATGCTTCAAAATCCTCAAGGAAAACAGTGGAAAGTTTCTTGTATAATGAATAATAAGCGATCATCAACAATGCGAATAATTAAGGGACTTCCTATTTTTGCTAGGGAAAACAATCTGTTAAGGAGATGTTTTTATGTGTTTGAGCTGATCAAGACGAAGCCTGTTGTTGTGCTACGAGTTACACCATCTCCCACGCTTCGCCAGAAAAATTCTGTCCCGTCATCGGCAGAGGAGGAAGTTAGGGAATCCAAACATTTTAAGAAGGCCATACTTCCCTCCCCCATTCATGCCAAACAAATGAAAATTCCAGATAACTTCATAACAATATTTGGGAATGAACTCAACAATGTTGCTAAAGTTACTGTTCCTGATGGTCGTGTATGGGACATAGAACTGAAGAAATGCGGAGAGAATGTTTTCTTTTGCAACAAATGGCAACAGTTTGCAGAATTTTATTCTATAGAGTATGGTTGCTACCTGTCTTTCAAATATGAAGGGAATTCAATGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAGATTGTATATCCTCCATTCAAAACTAATGGAGAACCAAAAAGAAAGTGTGGACGTCCTAGGAAAAAGTCGAGGGTTGAAATGAATGATGCTGATGATTTAGCGAGTGCTGAGGATCAAGGATCAAAGAACCCTTCTTTTACTTCCACCATAAGGCATCAACGTATGAGAATTCCAGATGAGTTTATAACAAGATTTGGAAATGAACTCAGTCATGTGGCTAAGATTACTGTTCCTGATGGTCGTCAATGGGATATGGAAGTCAAGAAATGCGGCAACGACATTTTCCTTTGCAACAAATGGCAAGAGTTTGCAGAACACTATTCTATCAGTTATGGTTGTTATTTAGATTTCAAGTATGAAGGGAACTCAGAGTTTAATGTTGTTATATATGATACAACTTCTCTTGAAATTTGCTATCCATTCAAAACTTCAAGTACTAACGGAAAACCAAACATAGAGTGTCCTAAAAGAGCAAAAGATGCTGTCAATGGAATCAATCCAAAAAACCCTTCTTTTTGTTCCAAATCCTTTAGAGACAACTTTGCATATGTTCCTGCTGAATTTGCTCCAAAGTATCTGAAGCTAAATGTTCCATTCAAGCTCCAAAATTCTCAAGGAAAGCAATGGGAAGTTTCTTGCGTATTCAATAAAAAAGGAAAATCAATGCGAATAACAACAGGATTCCGTAAATTTGCAAGGGATAACAATCTATTAAAGGGAGTTATTTATCATTTTGAGCTGATCAAGAGTGAGCCGGTTGTTGTGCTCCAAGTTACAGAGGCCCCCCACACGCCATGGCAGCAAAAGTGTGTCCGGTCATCAGAGGAGAAGGGAGTTAGGGGTTTTGAACATTTTAAGAAGGCCATACTTCCTTCACCCATTCATGCCAGACAAATTAAAATTCCAGATAACTTCATAACAATATTTGGGAATGAACTCAACAATGATGCTAAAGTTACTGTTCCCGATGGTCGTGTATGGGACATAGAACTGAAGAAACGCGACAACGACGTTTACTTTTGCAATAATTGGCAACAGTTTGCAGAATTTTATTCTATAGAGTATGGTTGCTACCTGTCTTTCAAATATGAAGGGAATTCAATGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAGATTGTATATCCTCCATTCAAAACTAATGGAGAACCAAAAAGAAAGCGTGGACGTCCTAGGAAAAGGTCGAGGGTTGAAATGAATGATGCAACTTCTGTTGAGATTGTCTATCCATTCAAAACTCCAAGTACTGATGGAGAACTAAACACAAAGTGTCCTAGTCCTGGGAAAAGGTCCAAGGTTGAAACAAGTAAGAGTCAAGGGCAAAAGCTCAAAAGCATGTCTAAACATGCTTCTAAAAGAGCAGAGATTGCTGCCATCGAATTCAAACCAAGCTACCCCTATTTTCGTTCAAAAATTTGTGAGCGAAGATATGTGTATGTTCATTGTGGTTTTGCTGCAAAGTATCTGAAGCAAAATGTTCCTATAAAGGTCCAAAATGCTCATGGAGAAGAGTGGGAAGTTTTCTGCACCCCGAATACTTTTGGGTCGTCGGAGATGCGAATATCGAGGGGATTTGCTTATTTTCAAAGGGCCAACAATCTATCACACGGAGATTATTGTGTTTTTGAGCTAATCCAGAAGAAGCCGGTTGTGCTAAAAGTAACAATGTTTCGCATGGTTGACTACCTTGATTAA 4470 0.4043 MKVRSERGRTKVVIRHLPPSLTESDLLQHIDNRFASRYNWFSFRPGNTSHKNERYARAYIDFNSPDDVLDFADLFNGHVFVNQKGVQHKAVVEYAPSQRVPKKTTKKDGRQGTIYKDPDYLEFLKLIAKSQEHLPSAEIQLERKEAEQAGASKEPPIVTPLMEYVRQKRAVDSGLLVSSAATRVGRRARAALPCKPGPGNTRRASEKKKYVQKDNIKNANRKDSRDKSAFTVVPRREDQSAESSIKGIYEIDSFVIDEYPVHGIEGSISGIPLTSDSGKKKILLLKGKQRETPKATEGMVKQQNAQSANSPISSTSKQNQRREAGGRLIRSILLNNESRQSQSTSAAQHKIQILTSENGKRPPRPFGSRSGLSDQVSNHDAGQVNSEGHSKRDLDEKFVRRDLHGLSIADKTEKRTRNKDRPDRGVWTPLRRSDSSHSIEHSSSSVAQPTPSNPESVEGEVKENVYSGNRSGEFSASAGGRSSSFVENGSQRIFTRRGAPYIAKDDGAVSLNEGKLSKKGVVGHSTHEKQVWVQKSSSDNGHLEELMECAMKHRRRSCVRSSAPPEEEEEEEEEKDSKHFMKAILPPPFHSKQIRIPDEFITRFGNELSNVAKITVPDGRRQWNMELKKCGRDVFLCNKWQEFAEYYSISYGCYLDFKYEGNSEFNVVIYDTTSLEISYPSKTPSTNGESNTKDTANECNPKNPSFRSKYMKAARGPYVYVPFEFAAEYLKLKVPFMLQNPQGKQWKVSCIMNNKRSSTMRIIKGLPIFARENNLLRRCFYVFELIKTKPVVVLRVTPSPTLRQKNSVPSSAEEEVRESKHFKKAILPSPIHAKQMKIPDNFITIFGNELNNVAKVTVPDGRVWDIELKKCGENVFFCNKWQQFAEFYSIEYGCYLSFKYEGNSMFSVIIFDATSVEIVYPPFKTNGEPKRKCGRPRKKSRVEMNDADDLASAEDQGSKNPSFTSTIRHQRMRIPDEFITRFGNELSHVAKITVPDGRQWDMEVKKCGNDIFLCNKWQEFAEHYSISYGCYLDFKYEGNSEFNVVIYDTTSLEICYPFKTSSTNGKPNIECPKRAKDAVNGINPKNPSFCSKSFRDNFAYVPAEFAPKYLKLNVPFKLQNSQGKQWEVSCVFNKKGKSMRITTGFRKFARDNNLLKGVIYHFELIKSEPVVVLQVTEAPHTPWQQKCVRSSEEKGVRGFEHFKKAILPSPIHARQIKIPDNFITIFGNELNNDAKVTVPDGRVWDIELKKRDNDVYFCNNWQQFAEFYSIEYGCYLSFKYEGNSMFSVIIFDATSVEIVYPPFKTNGEPKRKRGRPRKRSRVEMNDATSVEIVYPFKTPSTDGELNTKCPSPGKRSKVETSKSQGQKLKSMSKHASKRAEIAAIEFKPSYPYFRSKICERRYVYVHCGFAAKYLKQNVPIKVQNAHGEEWEVFCTPNTFGSSEMRISRGFAYFQRANNLSHGDYCVFELIQKKPVVLKVTMFRMVDYLD* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4974 1489 ProSiteProfiles B3 DNA-binding domain profile. 1201 1294 IPR003340 GO:0003677
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 1341 1370 - -
Tpr3g4974 1489 Gene3D - 2 99 IPR012677 -
Tpr3g4974 1489 ProSiteProfiles B3 DNA-binding domain profile. 1084 1179 IPR003340 GO:0003677
Tpr3g4974 1489 CDD B3_DNA 1409 1483 IPR003340 GO:0003677
Tpr3g4974 1489 ProSiteProfiles B3 DNA-binding domain profile. 579 673 IPR003340 GO:0003677
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 370 384 - -
Tpr3g4974 1489 Coils Coil 127 147 - -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 557 578 - -
Tpr3g4974 1489 Pfam Smg-4/UPF3 family 9 170 IPR005120 -
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 1199 1293 IPR015300 -
Tpr3g4974 1489 CDD B3_DNA 1201 1292 IPR003340 GO:0003677
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 958 1049 IPR015300 -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 468 484 - -
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 1388 1483 IPR015300 -
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 700 794 IPR015300 -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING 1073 1176 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING 963 1076 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING 1196 1484 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING 686 797 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING 816 950 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING 574 692 - -
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 819 913 IPR015300 -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 1341 1373 - -
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 577 672 IPR015300 -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 287 324 - -
Tpr3g4974 1489 CDD B3_DNA 578 671 IPR003340 GO:0003677
Tpr3g4974 1489 ProSiteProfiles B3 DNA-binding domain profile. 1420 1485 IPR003340 GO:0003677
Tpr3g4974 1489 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Tpr3g4974 1489 Gene3D - 1371 1488 IPR015300 -
Tpr3g4974 1489 Gene3D - 1070 1178 IPR015300 -
Tpr3g4974 1489 Gene3D - 686 798 IPR015300 -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 385 438 - -
Tpr3g4974 1489 CDD B3_DNA 720 796 IPR003340 GO:0003677
Tpr3g4974 1489 CDD B3_DNA 964 1048 IPR003340 GO:0003677
Tpr3g4974 1489 SUPERFAMILY DNA-binding pseudobarrel domain 1096 1172 IPR015300 -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 337 355 - -
Tpr3g4974 1489 CDD B3_DNA 820 912 IPR003340 GO:0003677
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 439 457 - -
Tpr3g4974 1489 Pfam B3 DNA binding domain 965 1047 IPR003340 GO:0003677
Tpr3g4974 1489 Pfam B3 DNA binding domain 1408 1483 IPR003340 GO:0003677
Tpr3g4974 1489 Pfam B3 DNA binding domain 719 791 IPR003340 GO:0003677
Tpr3g4974 1489 Pfam B3 DNA binding domain 1204 1293 IPR003340 GO:0003677
Tpr3g4974 1489 Pfam B3 DNA binding domain 1092 1169 IPR003340 GO:0003677
Tpr3g4974 1489 ProSiteProfiles B3 DNA-binding domain profile. 957 1050 IPR003340 GO:0003677
Tpr3g4974 1489 SMART B3_2 963 1050 IPR003340 GO:0003677
Tpr3g4974 1489 SMART B3_2 1090 1179 IPR003340 GO:0003677
Tpr3g4974 1489 SMART B3_2 1202 1294 IPR003340 GO:0003677
Tpr3g4974 1489 SMART B3_2 580 673 IPR003340 GO:0003677
Tpr3g4974 1489 SMART B3_2 706 798 IPR003340 GO:0003677
Tpr3g4974 1489 SMART B3_2 822 914 IPR003340 GO:0003677
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 337 484 - -
Tpr3g4974 1489 CDD RRM_like_Smg4_UPF3 11 96 - -
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 216 237 - -
Tpr3g4974 1489 CDD B3_DNA 1100 1173 IPR003340 GO:0003677
Tpr3g4974 1489 MobiDBLite consensus disorder prediction 296 322 - -
Tpr3g4974 1489 Gene3D - 1196 1295 IPR015300 -
Tpr3g4974 1489 Gene3D - 955 1051 IPR015300 -
Tpr3g4974 1489 Gene3D - 571 674 IPR015300 -
Tpr3g4974 1489 Gene3D - 814 915 IPR015300 -
Tpr3g4974 1489 ProSiteProfiles B3 DNA-binding domain profile. 821 914 IPR003340 GO:0003677
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 963 1076 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 1073 1176 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 1196 1484 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 574 692 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 686 797 - -
Tpr3g4974 1489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 816 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4974 Tpr-Chr3 54175073 54195817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4974 822 920 B3 DNA Binding Superfamily AT3G18990 44.444 1.05e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g4974 Smg4_UPF3 3.4e-50 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4974 K14328 - gmx:100795376 761.911