Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4972 ATGGGAAGAGGAAAGATAGAGATAAAAAGGATTGAGAATACAACAAATAGGCAAGTGACATTCTGCAAGAGAAGAAATGGTTTGTTGAAGAAAGCTTATGAGTTATCAGTTTTGTGTGATGCTGAAGTTGCTCTAATTGTCTTCTCCAGCCGTGGAAGACTTTATGAATATTCAAACAACAACATAAGATCAACAATTGATAGGTACAAAAAGGCATGTTCTGATCATTCGAGTACCACCACTACTACTGAGATTAATGCTCAGTATTATCAGCAAGAATCTGCAAAGCTGCGACAACAAATACAGATGCTGCAAAACTCTAACAGGCACTTGATGGGTGATGCTTTAAGCACATTGACTGTGAAAGAACTTAAGCAGCTGGAGAACAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTGCTGGCAGAAATTGAATACTTTCAGAAAAGGGAAATTGAGCTGGAAAATGAAAATCTTTGTCTTCGGACCAAGCAATTGCAGATAAATGATGTTGAGAGGCTTCCTCAAGTAAACATGGTTTCTGGACAAGAGCTGAATGCAATCCAGGCATTAGCATCTCGTAATTTCTTTGATCCAAACATGATCGAAGCTGAAACTTCCTACCATCAATCAGATAAGAAGATTCTTCATCTTGGGTGA 678 0.3805 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKQLQINDVERLPQVNMVSGQELNAIQALASRNFFDPNMIEAETSYHQSDKKILHLG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4972 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g4972 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g4972 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Tpr3g4972 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr3g4972 225 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Tpr3g4972 225 Coils Coil 87 107 - -
Tpr3g4972 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 215 - -
Tpr3g4972 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 215 - -
Tpr3g4972 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g4972 225 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4972 Tpr-Chr3 54163469 54169575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4972 1 225 MADS-box Gene Family AT4G09960 73.820 2.51e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr3g4972 K-box 4.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4972 K09264 - gmx:100301905 402.905