Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4958 ATGACAAACTCCATATATGATGCATTAGCTTTAATCTCAGCTGTAAAAAGTGTGTTTAAAGATGAGAATGGGGAAAAGTATGAAACTTTTTTAGAAGTTCTCAAGGATTTTAAGGCTGGAAGAATTGATAGAAGAGATGTCAAATATAGAGTGTATGAGTTGTTTAAAGGTCATCAAGATTTAATTTTTGGATTCAACAAATTCATGCCAACTCAATATGAAATCAAACTTCCAATGGATCATGATGACAATGAACAACAGGGACGCCAATTAGAGACAAATGATGCATTAGCGTTTCTCAAGAAAGTAAAAGATGTGTTTCAAGGTAAGAATAGGGAAAAGTATGATGAGTTTTTAGAAATTTTAAAGGATTTCAAGGCTCAAAGAATTCATACAAGTATTGTTGTGGAAAGAGTCAAGGAGATGTTTAAAGGGCATACAGATTTAATTTCGGGATTCAACGTCTTCTTGCCAAACACATTTCAAATCCAGCTTCACACTGGACGCCGATCAGAGACAGAAGATGCATCAGCGTTTATCGAGAAAGTAAAAGATGTGTTTGAAGTTAAGAATAAGGAAAAGTATGATGAGTTTTTAGAAATTTTAAAGGATAGCAAGGCTGGAAGAATTGATAGAAGTGTTGTCGCGGAAAGAGTCAAGGAGATGTTTGAAGGGCATACAGATTTAATTTTGGGATTCAACGCTTTCTTGCCAAACACACTTCAAATTCAGCTTCGCACTGGGGGAAAAATGAAGAAGTTATCAGAGAACTGTGAAATTCCTTGGGATCTGCTTGATATCATTTCCAGAAAACTAGATTTTGACGACTTCTTCGAATTTGCTGGTGTGTGCAAGAATTGGAGGGAGTTTCATAAAATTTATTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTGTTCAAAAGTCTTGCCATGATAAGAAATGTTTTAACTTCATGAGCATACCTGACCAAAGAGTTTATCACTCGAAGATGATCAATCATTACTGGGACTTTGCCTATTGCGGGTTTTCTAGTGGATATATGATCATGATAACGCAAAATAATTCATTTTTGCTAATGAATCCATTTACCAGAAGAAAGAAGATAATCCATACATCGGCCTTTAAAGTAAAATTTTCATATTTTGCTTACCATGTCTTACTTGCTTTTTGCAAAGGCTCAGAGGAATTTGTCTTTGTGGCTTTATGTAATAGCTCTGGCAGTTTGCATGTTTATCAATCTCGAAACTCTTGCTGGGTTACTTATTCAACAATAGGAAATCCATGGAAGGTTGTTGACTTTGTTGTTTTGTATAATACAATATATGTTGTCACCGACAAAGCCATTATAGGTGTACTCGACTTGAATTCCGCAAATATAAAATTTTTAGAACTGAAGAGTACTCCTGCCGTAACATCTTCCTCGCACCTAAGGTTGGTTAGTTGTGATGGACAACTTTTAGTGATTCATATTACATCTGAGGAAATATTGAATGTGTACAAGATAGACTTCTCAACCAAGAATTATGTCATGCTGGAAACTTTGGGTGACATTGCATTATTTTATGCTTCAGGAGAATACTTCTATGCATTGAGCAACCCGAGAATGTGGGGTTATGAAACCAACTCTTTGCATGTCATCAATCTTTCATGTACAAAATGCATAGTGTGTGTGGGGGATGACAACAAACTGCCAGAATACATTATGCATGATACACATAAAGTTCCTCCAAGAGAAGGAGGCTACTTGTTGGACTGGTGTTTTAAACATCTACACTATGAGGTGGATTATTCTCCAAGTTAA 1806 0.3577 MTNSIYDALALISAVKSVFKDENGEKYETFLEVLKDFKAGRIDRRDVKYRVYELFKGHQDLIFGFNKFMPTQYEIKLPMDHDDNEQQGRQLETNDALAFLKKVKDVFQGKNREKYDEFLEILKDFKAQRIHTSIVVERVKEMFKGHTDLISGFNVFLPNTFQIQLHTGRRSETEDASAFIEKVKDVFEVKNKEKYDEFLEILKDSKAGRIDRSVVAERVKEMFEGHTDLILGFNAFLPNTLQIQLRTGGKMKKLSENCEIPWDLLDIISRKLDFDDFFEFAGVCKNWREFHKIYWRNFLASQEPLLVQKSCHDKKCFNFMSIPDQRVYHSKMINHYWDFAYCGFSSGYMIMITQNNSFLLMNPFTRRKKIIHTSAFKVKFSYFAYHVLLAFCKGSEEFVFVALCNSSGSLHVYQSRNSCWVTYSTIGNPWKVVDFVVLYNTIYVVTDKAIIGVLDLNSANIKFLELKSTPAVTSSSHLRLVSCDGQLLVIHITSEEILNVYKIDFSTKNYVMLETLGDIALFYASGEYFYALSNPRMWGYETNSLHVINLSCTKCIVCVGDDNKLPEYIMHDTHKVPPREGGYLLDWCFKHLHYEVDYSPS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4958 601 ProSiteProfiles PAH domain profile. 89 160 IPR003822 GO:0006355
Tpr3g4958 601 PANTHER OS06G0113600 PROTEIN 250 597 - -
Tpr3g4958 601 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Tpr3g4958 601 PANTHER OS06G0113600 PROTEIN 250 597 - -
Tpr3g4958 601 Pfam Paired amphipathic helix repeat 113 157 IPR003822 GO:0006355
Tpr3g4958 601 Pfam Paired amphipathic helix repeat 193 237 IPR003822 GO:0006355
Tpr3g4958 601 Pfam Paired amphipathic helix repeat 25 68 IPR003822 GO:0006355
Tpr3g4958 601 SUPERFAMILY PAH2 domain 4 73 IPR036600 GO:0006355
Tpr3g4958 601 SUPERFAMILY PAH2 domain 87 159 IPR036600 GO:0006355
Tpr3g4958 601 ProSiteProfiles PAH domain profile. 169 240 IPR003822 GO:0006355
Tpr3g4958 601 Gene3D Paired amphipathic helix 95 158 IPR036600 GO:0006355
Tpr3g4958 601 Gene3D Paired amphipathic helix 175 238 IPR036600 GO:0006355
Tpr3g4958 601 Gene3D Paired amphipathic helix 7 70 IPR036600 GO:0006355
Tpr3g4958 601 SUPERFAMILY PAH2 domain 170 239 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4958 Tpr-Chr3 54070009 54074913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4958 7 80 WRKY Transcription Factor Family AT4G12020 49.333 5.24e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr3g4958 PAH 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4958 K11644 - cam:101488742 749.199