Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4946 ATGTCTACATATAGTGAAACAACGGTGCATCTAGAATGTGATACAGATGATGAAGTAGAAATTAATAGCGGTAATGACTTGTGCAGTCAGCAAGGGAATGAGAACTCCAATGATTACAAATGTATCAGTGATTTGACAGATGATGATATAAGGGGTATGGAATTCAGCACAGAGACAGAAGCTACATCATTTTACAAATTGTATGCACATTTCCATGGGTTTGCTGTAAGAAAGGATGATGTAAAACGTGATCGTGAAAAGAAGATTTATATGCGTCAATTACTTTGCAATAAAGCGGGTACTAGCACTGGTAATATGAGGCCAACTACTCGAACTGGTTGTGAAGCGAAACTTCGACTACTCTATGATGTTGATTGTAAAAAATTTAGAGTTTCTGTTTTCAACCCTACTCACAACCATGATTTAACTCCTGAACGTTTTGTTCATTTGATTCCTAACTATCGTAAATTGACTGAGGCGGATAAACAAGTTGTTAATGGCTTTATTTCCAGGGTAAGGCTGATGGTGATGCATCATTTTTTTCAGAGTTTAGTTTTACAGATGATGGACGCCTAG 576 0.3698 MSTYSETTVHLECDTDDEVEINSGNDLCSQQGNENSNDYKCISDLTDDDIRGMEFSTETEATSFYKLYAHFHGFAVRKDDVKRDREKKIYMRQLLCNKAGTSTGNMRPTTRTGCEAKLRLLYDVDCKKFRVSVFNPTHNHDLTPERFVHLIPNYRKLTEADKQVVNGFISRVRLMVMHHFFQSLVLQMMDA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4946 191 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 16 156 - -
Tpr3g4946 191 Pfam FAR1 DNA-binding domain 63 143 IPR004330 -
Tpr3g4946 191 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 16 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4946 Tpr-Chr3 53997438 53998708 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr3g4946 FAR1 1.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4946 - - adu:107494050 116.701