Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4921 ATGGCTCTGAAGTTTATAGCGATTTCGGCGGTTTCTACAGTGTTAAGTTTTGTAGGTCTTCAGTTTTGCACAGATTTATCATTAGATAAACTTAAGTCAGATGGACTAATCGGCTGGAATTCAATTCACTTAGACAATTTCAATCATGACATTGAGTTACCTTTGGGTTTGTATACCACCATAGGGTTACTGACAAATTGCATGATCAATGTATTTGTCCTTCTTAATCTTTGTCTCAAGGCTATGTTTTTCGCAGACTTGTATCCTTCTGAAACTCGTAAATTGATTGAACGTCTCGTTAATTATGTCATTTACAAGGGGACATTTCTTCCATTGATTGTGCCACCAACACTTTATCAGGCAGGTCTCTGGTCAACTTGGTTGGCCGTGCTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGACTGGAGCGACTGAATGCATCTCCATCTGCCACACCATGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTGGTCGATGTTCTCTGGATGAGGTTTTGTCTTTCAATATATAGAACACATGGGTCGTCTATGTTTCTCTTACTATTCTTTGAGCCTTTAAGTATCGCTTTCGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGATTCATCATTCGGCTTGCAGTGGCAGTGATTTCCGAACACGGAAACTGCTTGACACATTAACTGCAGGATCTTTATTGGAATGGAAGGGAGTTCTCATCCGAAACTTGGGATTTTTCCTGGATATGGCAACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCGTTACTTAGTGCAATGATAAATCGCGTCAAAGGCTTTATTAGGCTAAGGATAGCTCTAGGAGCACTTCATGCAGCTCTTCCCGATGCAACAACCGAGGAGCTGAGAGCATATGAAGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTACACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGTCGCCCAGAAAATGAAACTAGTGCAAGTACAGGGGTAATATCCAGTGATGAGCAACTTGCACGCCAAATAAGTGCAGGATTTGATCGTCAAAACTCGGCTAGACATACCATGCCAGCAGGATTGTTTCCAAATCAGACACCCAACAATGCCGATGGTGTTCCTTGGAGGGGTGCAGGACTGGACTCGGGATGGTTGCATTCTTGGCCAAATCAGGGTGTTGATGGTGGTGCTGGTCCATCTACTGGTATCAGAACAGTAGGTCTTGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTACCTTTGATGATGCTTCTTGGAACCTTTGGCCTATTAATCCGTCTCAGGCTTCAACAAGTGGTCCAAGTCCGACGACCATTCCTTCCCCTGGTGTAAGATTGCCAGGAGGAAATGGTGGTTTACATATAAGGACTCCTTCACGATCTGGAAATGATAATGTAGCAAATGTACTTGCTATGGCTGAGACTGTTCGAGAGGTTCTGCCTCATATTCCCGATGACATAATATTCCAGGACTTACAGCGGACAAATTCTGTGACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1773 0.4247 MALKFIAISAVSTVLSFVGLQFCTDLSLDKLKSDGLIGWNSIHLDNFNHDIELPLGLYTTIGLLTNCMINVFVLLNLCLKAMFFADLYPSETRKLIERLVNYVIYKGTFLPLIVPPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWMRFCLSIYRTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSGSDFRTRKLLDTLTAGSLLEWKGVLIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAMINRVKGFIRLRIALGALHAALPDATTEELRAYEDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETSASTGVISSDEQLARQISAGFDRQNSARHTMPAGLFPNQTPNNADGVPWRGAGLDSGWLHSWPNQGVDGGAGPSTGIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQASTSGPSPTTIPSPGVRLPGGNGGLHIRTPSRSGNDNVANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4921 590 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Tpr3g4921 590 CDD CUE_RIN3_plant 551 588 IPR035667 -
Tpr3g4921 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Tpr3g4921 590 Pfam Ring finger domain 336 380 IPR001841 -
Tpr3g4921 590 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 590 - -
Tpr3g4921 590 SMART ring_2 338 379 IPR001841 -
Tpr3g4921 590 Gene3D - 549 589 - -
Tpr3g4921 590 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 590 - -
Tpr3g4921 590 Pfam CUE domain 554 590 IPR003892 GO:0043130
Tpr3g4921 590 ProSiteProfiles CUE domain profile. 550 590 IPR003892 GO:0043130
Tpr3g4921 590 SUPERFAMILY RING/U-box 325 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4921 Tpr-Chr3 53797223 53803843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4921 57 397 C3H Transcription Factor Family AT3G16090 29.428 5.53e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4921 K10636 - gmx:100820578 1028.08