LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4909	ATGGATAGGATTCAAGAGAGAGATGAAAGTAACAGAAGTCGGCATTCATCGTCTTCGGTTGTAGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTCAACAAGTTTGTTCCTGAGGGAATGATTGTCTTCAAGCTGATACATGTTCATGCTGGTATAGTAGGAGTTCCCACACCAATGGGAAATCTTCTCCCAATTTCACAAGTGCGAGATGATGTAGCGGCTGCTTACAGACAGGAAGTGGAGTGGCAGACAAATCAAATGCTTCTACCTTTTAAGAAAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCGGATGATGTAGCATCTGCAGTAGCGGAGGAAATAACTAAGGATGGTATAACCAAATTGGTTGTTGGAGCTTCATCTGGTGGCTTATTTAAAAGTAAACATAAGGAGATGTCTGCAAAAATCTCAGTTTGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCTAAAGGAAAATTGTCCATACGGCCATCGGACATGCAGATTGATGAAAGCATTACAGATGACGCAAGTGAAATCAGTTTTTCCTCCAGCAGTTCATCAAACTACACTTCTACCACTCAGACAGATTCTGGCTCGGTTGCATCATATGCTGCTTTACATTCATCTTCCTTGGCAACACAGCGATTTCAAGCTCTTTCAAGTATGAATCAGAACCTTCTAAACACAACTCCTAGTTTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACGAGGAAATGTTGCTACAAGTTCTGCTAGAAACTCAGATTTTGACCGTGGTCTGAGTCGAGCCTCTAGTTTCAGAAGCATTGTTTCAGATACTGATACTTGGATTTATGATCAAAAATCTTTAAAGGATGCGCCACTAGCTTCTAAACTTGCATCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGTCCAAGGAATGCATGCAGTAGCTCAAACTGAGAACATCGATGCATCACGAAAGCTAAGTGAACTAAGCAAGAGGAGATCAGGAGAATCCATGAAAATGAAGGAGATCATTGCTAAGGAGGAAGTGGCTCAAGAATTAGCAAGACAAGAAATAGAGAAATATGAAGCTGCCGCAAGAGAAGCTGCATATTTGAAAGAATGTGCTGAAAGAGAAGCTTCAGAAAGAAAAGAAACAGAATTAAAAGCTATCCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTGAGTGGTTCCACACCTCAGTACCAAAAATTTATGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAGAATTGGAATGGGTGCATATGGAATGGTGTATAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTCTCCACTCTGCCGGAATCAGCCAAAGCAAGCAATTCCAGCAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTACGAATACATGGAAAATGGTAGCTTGGAGGATAGACTATTTCAGAAAAACAGTACCATCCCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCATCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCACAACCTATCATCCATCGTGACTTGAAACCTGCAAACATCTTGCTCGGTGGTAACCTTGTCAGCAAGATTGGTGATATTGGTCTTTCTACGATTCTCACTTCAGACGATTTATCTACCATGTATAAAGACACGGCGCCTGTTGGAACACTCAGCTACATCGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCTGATGTTTATGCTTTCGGATTAGTGATGTTACAGTTGTTGACAGCAAAACCAGCAACAGCAATTACTCATGTGGTTGAAACAGCAATTGAGGACGGCAACTTAACAGATATATTAGATACAAAGGCAGGATCATGGCCATTTCAAGAGACATTAGACTTAGCTAGATTAGCTTTGAGTTGTGCGGAGCTTCGGCGTAGAGACCGACCTGATTTGTTAGATCATGTGCTTCCTACATTGGAGAAGTTAAAAGAAGTTGCCGATAGGGCTCATTATTCCGCTTCAATGGTTACTATTAAACCCAAAGCTCCAAACCATTTTATCTGCCCTATACTCCAGGATGTGATGGACGATCCTTGTGTTGCCGCAGATGGATATACATACGATCAAAAAGCAATTGAAAAATGGCTTAAAGAGAATGAAAAATCACCAATGACAAACATGGCTTTACCTCATAAGATTCTAATTCCTAATTACACACTTCTATCAGCAATTTTGGAATGGAAATCTAAAGAAATATGA	2421	0.404	MDRIQERDESNRSRHSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIVFKLIHVHAGIVGVPTPMGNLLPISQVRDDVAAAYRQEVEWQTNQMLLPFKKMCEQRKVHVDVVVIESDDVASAVAEEITKDGITKLVVGASSGGLFKSKHKEMSAKISVCTPRFCTVYAVSKGKLSIRPSDMQIDESITDDASEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSSMNQNLLNTTPSLNETNHSRGQSIDLGRGNVATSSARNSDFDRGLSRASSFRSIVSDTDTWIYDQKSLKDAPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAQELARQEIEKYEAAAREAAYLKECAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYQKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTIPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILTSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATAITHVVETAIEDGNLTDILDTKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADRAHYSASMVTIKPKAPNHFICPILQDVMDDPCVAADGYTYDQKAIEKWLKENEKSPMTNMALPHKILIPNYTLLSAILEWKSKEI*	807

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4909	806	ProSiteProfiles	U-box domain profile.	735	806	IPR003613	GO:0004842\|GO:0016567
	Tpr3g4909	806	SUPERFAMILY	RING/U-box	734	804	-	-
	Tpr3g4909	806	CDD	RING-Ubox_WDSUB1_like	740	780	-	-
	Tpr3g4909	806	ProSitePatterns	Protein kinases ATP-binding region signature.	458	479	IPR017441	GO:0005524
	Tpr3g4909	806	CDD	STK_N	20	172	-	-
	Tpr3g4909	806	Gene3D	HUPs	13	148	IPR014729	-
	Tpr3g4909	806	SUPERFAMILY	Protein kinase-like (PK-like)	434	706	IPR011009	-
	Tpr3g4909	806	Pfam	U-box domain	736	803	IPR003613	GO:0004842\|GO:0016567
	Tpr3g4909	806	Pfam	Protein tyrosine and serine/threonine kinase	457	705	IPR001245	GO:0004672\|GO:0006468
	Tpr3g4909	806	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 35	16	802	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4909	Tpr-Chr3	53713352	53719008	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g4909	18	803	U-box Gene Family	AT4G25160	53.641	0.0	838

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Tpr3g4909		PK_Tyr_Ser-Thr	2.3e-40	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4909	-		-	gsj:114409387	1216.45

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