Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4909 ATGGATAGGATTCAAGAGAGAGATGAAAGTAACAGAAGTCGGCATTCATCGTCTTCGGTTGTAGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTCAACAAGTTTGTTCCTGAGGGAATGATTGTCTTCAAGCTGATACATGTTCATGCTGGTATAGTAGGAGTTCCCACACCAATGGGAAATCTTCTCCCAATTTCACAAGTGCGAGATGATGTAGCGGCTGCTTACAGACAGGAAGTGGAGTGGCAGACAAATCAAATGCTTCTACCTTTTAAGAAAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCGGATGATGTAGCATCTGCAGTAGCGGAGGAAATAACTAAGGATGGTATAACCAAATTGGTTGTTGGAGCTTCATCTGGTGGCTTATTTAAAAGTAAACATAAGGAGATGTCTGCAAAAATCTCAGTTTGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCTAAAGGAAAATTGTCCATACGGCCATCGGACATGCAGATTGATGAAAGCATTACAGATGACGCAAGTGAAATCAGTTTTTCCTCCAGCAGTTCATCAAACTACACTTCTACCACTCAGACAGATTCTGGCTCGGTTGCATCATATGCTGCTTTACATTCATCTTCCTTGGCAACACAGCGATTTCAAGCTCTTTCAAGTATGAATCAGAACCTTCTAAACACAACTCCTAGTTTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACGAGGAAATGTTGCTACAAGTTCTGCTAGAAACTCAGATTTTGACCGTGGTCTGAGTCGAGCCTCTAGTTTCAGAAGCATTGTTTCAGATACTGATACTTGGATTTATGATCAAAAATCTTTAAAGGATGCGCCACTAGCTTCTAAACTTGCATCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGTCCAAGGAATGCATGCAGTAGCTCAAACTGAGAACATCGATGCATCACGAAAGCTAAGTGAACTAAGCAAGAGGAGATCAGGAGAATCCATGAAAATGAAGGAGATCATTGCTAAGGAGGAAGTGGCTCAAGAATTAGCAAGACAAGAAATAGAGAAATATGAAGCTGCCGCAAGAGAAGCTGCATATTTGAAAGAATGTGCTGAAAGAGAAGCTTCAGAAAGAAAAGAAACAGAATTAAAAGCTATCCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTGAGTGGTTCCACACCTCAGTACCAAAAATTTATGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAGAATTGGAATGGGTGCATATGGAATGGTGTATAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTCTCCACTCTGCCGGAATCAGCCAAAGCAAGCAATTCCAGCAAGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTACGAATACATGGAAAATGGTAGCTTGGAGGATAGACTATTTCAGAAAAACAGTACCATCCCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCATCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCACAACCTATCATCCATCGTGACTTGAAACCTGCAAACATCTTGCTCGGTGGTAACCTTGTCAGCAAGATTGGTGATATTGGTCTTTCTACGATTCTCACTTCAGACGATTTATCTACCATGTATAAAGACACGGCGCCTGTTGGAACACTCAGCTACATCGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCTGATGTTTATGCTTTCGGATTAGTGATGTTACAGTTGTTGACAGCAAAACCAGCAACAGCAATTACTCATGTGGTTGAAACAGCAATTGAGGACGGCAACTTAACAGATATATTAGATACAAAGGCAGGATCATGGCCATTTCAAGAGACATTAGACTTAGCTAGATTAGCTTTGAGTTGTGCGGAGCTTCGGCGTAGAGACCGACCTGATTTGTTAGATCATGTGCTTCCTACATTGGAGAAGTTAAAAGAAGTTGCCGATAGGGCTCATTATTCCGCTTCAATGGTTACTATTAAACCCAAAGCTCCAAACCATTTTATCTGCCCTATACTCCAGGATGTGATGGACGATCCTTGTGTTGCCGCAGATGGATATACATACGATCAAAAAGCAATTGAAAAATGGCTTAAAGAGAATGAAAAATCACCAATGACAAACATGGCTTTACCTCATAAGATTCTAATTCCTAATTACACACTTCTATCAGCAATTTTGGAATGGAAATCTAAAGAAATATGA 2421 0.404 MDRIQERDESNRSRHSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIVFKLIHVHAGIVGVPTPMGNLLPISQVRDDVAAAYRQEVEWQTNQMLLPFKKMCEQRKVHVDVVVIESDDVASAVAEEITKDGITKLVVGASSGGLFKSKHKEMSAKISVCTPRFCTVYAVSKGKLSIRPSDMQIDESITDDASEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSSMNQNLLNTTPSLNETNHSRGQSIDLGRGNVATSSARNSDFDRGLSRASSFRSIVSDTDTWIYDQKSLKDAPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAQELARQEIEKYEAAAREAAYLKECAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYQKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTIPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILTSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATAITHVVETAIEDGNLTDILDTKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADRAHYSASMVTIKPKAPNHFICPILQDVMDDPCVAADGYTYDQKAIEKWLKENEKSPMTNMALPHKILIPNYTLLSAILEWKSKEI* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4909 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Tpr3g4909 806 SUPERFAMILY RING/U-box 734 804 - -
Tpr3g4909 806 CDD RING-Ubox_WDSUB1_like 740 780 - -
Tpr3g4909 806 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Tpr3g4909 806 CDD STK_N 20 172 - -
Tpr3g4909 806 Gene3D HUPs 13 148 IPR014729 -
Tpr3g4909 806 SUPERFAMILY Protein kinase-like (PK-like) 434 706 IPR011009 -
Tpr3g4909 806 Pfam U-box domain 736 803 IPR003613 GO:0004842|GO:0016567
Tpr3g4909 806 Pfam Protein tyrosine and serine/threonine kinase 457 705 IPR001245 GO:0004672|GO:0006468
Tpr3g4909 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 16 802 - -
Tpr3g4909 806 ProSiteProfiles Protein kinase domain profile. 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4909 806 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 146 - -
Tpr3g4909 806 Coils Coil 407 429 - -
Tpr3g4909 806 MobiDBLite consensus disorder prediction 248 274 - -
Tpr3g4909 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Tpr3g4909 806 Gene3D Transferase(Phosphotransferase) domain 1 525 733 - -
Tpr3g4909 806 SMART serkin_6 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4909 806 SMART Ubox_2 739 801 IPR003613 GO:0004842|GO:0016567
Tpr3g4909 806 Gene3D Phosphorylase Kinase; domain 1 430 524 - -
Tpr3g4909 806 PANTHER OS02G0152300 PROTEIN 16 802 - -
Tpr3g4909 806 Coils Coil 371 405 - -
Tpr3g4909 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 806 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4909 Tpr-Chr3 53713352 53719008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4909 18 803 U-box Gene Family AT4G25160 53.641 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tpr3g4909 PK_Tyr_Ser-Thr 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4909 - - gsj:114409387 1216.45