Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4899 ATGGAGAACAAGGGCAGAGTATGCCCCATTTGTGACAAGTTATTTTCTAATGGGAAAGCTTTGGGAGGGCATATGAAAGCACACTTAGCCAAATTACCTCTCCCTCCAAAGCCCTCAATGGAGTCAACCAAACATTCAACTCACTTTAATGCAAGAAGTGACCCTATACCCAATCTTCGATCTTTGAAAAGGAACTTTTGTTACGCCCTAGCAAACTCTGGTGGGAATAGTACGTTTGAGTTTTATCCAAAAATCCCAACTGGAAAAAGATCGAAACGCCAACGAAAACAATTTATTGTGGCTGAGGAAAAAGAAGATATTACACAATCTAACGAGGCTAAAGAAAATGCTGAGAATACACAATGTAAAATTGTGTATAATAACACCGATTTAGAACTTGCTGAAACAATAGTATTTATGAACAGGAAAGAATGGCAACAAATTAATGAGAAATACCTCGGTGAAGAAGTTGGTCGAAGTGGAAATGAAGATGTTGAATTGGATCAAGTGCGTGAGGAACACATGAAGGTATACTTCTCTGGTTGTTTCTAA 552 0.3822 MENKGRVCPICDKLFSNGKALGGHMKAHLAKLPLPPKPSMESTKHSTHFNARSDPIPNLRSLKRNFCYALANSGGNSTFEFYPKIPTGKRSKRQRKQFIVAEEKEDITQSNEAKENAENTQCKIVYNNTDLELAETIVFMNRKEWQQINEKYLGEEVGRSGNEDVELDQVREEHMKVYFSGCF* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4899 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Tpr3g4899 183 Coils Coil 100 120 - -
Tpr3g4899 183 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 169 - -
Tpr3g4899 183 Pfam C2H2-type zinc finger 7 30 - -
Tpr3g4899 183 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 169 IPR044303 GO:0006355
Tpr3g4899 183 SUPERFAMILY beta-beta-alpha zinc fingers 3 33 IPR036236 -
Tpr3g4899 183 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4899 Tpr-Chr3 53669494 53670045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4899 8 38 C2H2 Transcription Factor Family AT1G02030 54.839 4.68e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g4899 zf-C2H2_6 3.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4899 - - cam:101506958 161.77