Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4894 ATGTTTTCAAACATTTATGAGATAAATTCTGATAGAGCAACATGGAATTTTAAGGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAACTCATGTGCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAGTTTAAACATGACATAATTGAGGGAAAAATTTATTCTTTTGAAAATCTTGGTGTTGCTTCTAATACTGGAGCTTATAGGACAACACATCACCCATACAAACTGAATTTTCAGTTTGGCTCCTTGGTTCAGAGGCTGTCCAACTGTGATATTTCGAAATCTCCATTTACCTTTGTTCCAATTGGTGATATTTTGAGCGGTTGTTATGACATTGACTTTTTAGTGGATGTTATTGGTTTGTTGACCGAGATTGGCCAGGAGCGTGAGATCACTAATCAAAATGGTAGCACAACGAAGCTGAATGTTATTTCCTTGGAAGCTGATGGGTATGACATTACCTCAGGGTTCACTTTCATAAACTTATTGGATATGTCAATATCATCTATATTTTAG 576 0.349 MFSNIYEINSDRATWNFKAKVIRLWQVNDFNRTHVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHDIIEGKIYSFENLGVASNTGAYRTTHHPYKLNFQFGSLVQRLSNCDISKSPFTFVPIGDILSGCYDIDFLVDVIGLLTEIGQEREITNQNGSTTKLNVISLEADGYDITSGFTFINLLDMSISSIF* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4894 191 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 19 173 - -
Tpr3g4894 191 Gene3D - 110 176 IPR012340 -
Tpr3g4894 191 SUPERFAMILY Nucleic acid-binding proteins 2 108 IPR012340 -
Tpr3g4894 191 CDD RPA1_DBD_A_like 18 104 - -
Tpr3g4894 191 Pfam Domain of unknown function DUF223 40 106 IPR003871 -
Tpr3g4894 191 Gene3D - 2 109 IPR012340 -
Tpr3g4894 191 PANTHER REPLICATION FACTOR A 1, RFA1 19 173 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4894 Tpr-Chr3 53586665 53587328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4894 5 167 Core DNA Replication Machinery Family AT2G06510 24.551 1.94e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4894 - - mtr:MTR_4g036240 225.328