Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4892 ATGGAGCTAAAGGCGAATCATACTCTCCTTGCTGATACTGCAACCTTAACAAGGACAAGATCAAGGCTTGGCACAGGCTCACCTTCGAGTTTGTCATGCTCTCCTACAGCCACTTCAACTTTTCTGCACGGTCCTTCGCTAACAATTCCAAGGAAGAAGATTGGAATTCTTGATGATGTTCGTTCTAACGGTTGGCTTGATGCAATGAGATCGTCTTCTCCTACTCGCAAGAAAATACCTATGGATGTTGGTCATGGTGTTGCGTCTTCTGAAGCTGATGCTGCTTATTTAACCTGGCTGCTAGAGTTTCCGTCAGCACTTTCATCTTTCGAGCAAATTACTAACTGTGCAAAAGGCAAGAAAATAGCATTGTTTCTGGATTATGACGGGACTCTTTCACCAATTGTTGACAATCCTGACCGTGCTTTCATGTCCGACGACATGCGTGCTGCTGTTAAAAATGTGGCTGAATATTTTCCGACTGCAATAATTAGTGGAAGAAGTCGTGAAAAGGTACATGAATTTGTCGGAATAACGGATCTTTATTATGCTGGTAGTCATGGAATGGACATAATTGGTCCTCTTAGACAATCTGTATCTGATAATCACCCTAACTGTATTAGGTCTACTGATAAGAAGGGCAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTTCCTATGATTGACGAGGTCCGTAGGTTGTTCATTGAGTGTACAAAAGACATCAAAGGAGCAAAAGTTGAGAACAATAAGTTTTGTGTCTCTGTACATTATCGTAACGTAGACGAGGAGAATTGGGATATGGTGGCACAACGCGTTTATGATATTATGAAAGACTATCCACATTTGCGATTAACTCACGGTCGGAAGGTTTTAGAGGTCCGACCAGTGATTGACTGGGACAAGGGAAAAGCTGTTACATTTTTGCTCGAGTCACTTGGACTTAACGATGACGATGATGTGCTAGCTATATATATTGGTGACGATCGAACTGATGAAGACGCATTTAAGGTTTTGAGTGAGGTTAATAAAGGTTTTGGAATCTTAGTTTCTTCGGCTCCTAAAGAAAGCAACGCGGTTTACTCTCTTACTGATCCCTCAGAGGTCATGGAATTTCTCAAGTCACTAGTGGTGTGGAAATCAAGCTCTATAGTATAA 1164 0.4158 MELKANHTLLADTATLTRTRSRLGTGSPSSLSCSPTATSTFLHGPSLTIPRKKIGILDDVRSNGWLDAMRSSSPTRKKIPMDVGHGVASSEADAAYLTWLLEFPSALSSFEQITNCAKGKKIALFLDYDGTLSPIVDNPDRAFMSDDMRAAVKNVAEYFPTAIISGRSREKVHEFVGITDLYYAGSHGMDIIGPLRQSVSDNHPNCIRSTDKKGKEVNLFQPAAEFLPMIDEVRRLFIECTKDIKGAKVENNKFCVSVHYRNVDEENWDMVAQRVYDIMKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDDDDVLAIYIGDDRTDEDAFKVLSEVNKGFGILVSSAPKESNAVYSLTDPSEVMEFLKSLVVWKSSSIV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4892 387 CDD HAD_TPP 123 373 - -
Tpr3g4892 387 Pfam Trehalose-phosphatase 125 369 IPR003337 GO:0003824|GO:0005992
Tpr3g4892 387 SUPERFAMILY HAD-like 123 380 IPR036412 -
Tpr3g4892 387 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 7 386 IPR044651 GO:0004805|GO:0005992
Tpr3g4892 387 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Tpr3g4892 387 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 7 386 - -
Tpr3g4892 387 Gene3D - 122 213 IPR023214 -
Tpr3g4892 387 Gene3D - 231 386 IPR023214 -
Tpr3g4892 387 TIGRFAM T6PP: trehalose-phosphatase 119 379 IPR003337 GO:0003824|GO:0005992
Tpr3g4892 387 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 341 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4892 Tpr-Chr3 53561552 53566010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4892 118 378 Trehalose Biosynthesis Gene Families AT1G70290 27.143 1.64e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4892 K01087 - gmx:100819495 580.867