Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4887 ATGGCAATCAATATTGGAAAAATATTTTTCATGCTCTTATTTTTATCTTCAATTTTATCAATAGCCTCATCAAGAAAAGGACCATCCTCAAGCAACATAGATTGGTGGTGCAACCAAACACCACATCCTCAACCATGCAAACACTACACAACTCAAATGAACAAACATTTCAAAATCAAACATAGAGTTGAATTTAGAGGAATGCTTGTTCAATTAGCATTAAAACAAGCTATCATCATGCAAAAAGAAGCAAAAGAAAATTCTTATCAAAATTCATCGGTGCATAAAACGGTTCATGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCACCTAAATCGTACACTTGAAGGCTTAAACAATGCAAACAAAACATGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATTGTGCAAACCAATGTTATTGAGATGATAAGGAATATCTTAGCCATCAATATGCATTTCATGAAACACAACAAAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAAGCTTTTACAGACTAACTCTTCAATAAAGTTCAATCTTGTGGTTGCAAAAGATGGTTCTGGAAACTTTAAGACAGTGCAAGCTGCTCTGGATGCTGCTGCTAAGAGAAAATATAAGACAAGGTTTGTGATACATGTGAAGAAAGGTGTTTATAGAGAGAATATTGAGGTTGCTGTGCATAATGATAATATTATGTTGGTTGGTGATGGAATGCAAAATACTATAATAACAAGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCTGGCATTGATGGACTTCACTTCATTGCACGCGACATAACCTTCCAAAATACAGCTGGTCTACACAAGGGTCAAGCCGTGGCACTTCGATCAGCCTCAGATCTCTCAGTATTCTACCGATGTGCCATATCAGGTTACCAAGACACCCTCATGACTCATGCACAACGTCAATTTTACCGACAATGCTACATCTATGGCACCGTAGACTTCATATTTGGCAACGCCGCAGTGGTATTCCAAAATTGTAAAATTTTCGCAAGAAAGCCTTTAGATGGTCAAGCTAACATGATCACTGCCCAAGGTCGAGGTGACCCATTCCAAAACACCGGAATTTCATTCCATAATTGTCAAATTATGGCTGCGTCCGATCTAAAGCCTGTCGTCGACAAGTACAATACCTTCTTGGGTCGGCCTTGGCAACAATACGCAAGGGTTATGGTGATGAAAACTTTTATGGACACATTAGTGAGCCCCTTGGGCTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGGTGAGTATGAAAACTATGGGCCTGGTTCATCAACGGTAAACAGAGTGAAATGGCCTGGTTATCACGTGATAACAAGCCCAAATGAAGCTGCAAAGTTTACTGTTACTGGACTCCTTGCTGGCCCAACATGGTTGGCTACAACTACTGTGCCATTTACTTCTGGGCTTTGA 1581 0.3915 MAINIGKIFFMLLFLSSILSIASSRKGPSSSNIDWWCNQTPHPQPCKHYTTQMNKHFKIKHRVEFRGMLVQLALKQAIIMQKEAKENSYQNSSVHKTVHGDCLKLFENTIFHLNRTLEGLNNANKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQTNVIEMIRNILAINMHFMKHNKETKEGLFPSWFSRHEKKLLQTNSSIKFNLVVAKDGSGNFKTVQAALDAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGLHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCKIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIMAASDLKPVVDKYNTFLGRPWQQYARVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTVNRVKWPGYHVITSPNEAAKFTVTGLLAGPTWLATTTVPFTSGL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4887 526 Gene3D - 207 526 IPR012334 -
Tpr3g4887 526 SUPERFAMILY Pectin lyase-like 211 525 IPR011050 -
Tpr3g4887 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 177 IPR035513 -
Tpr3g4887 526 PANTHER PECTINESTERASE 5 525 - -
Tpr3g4887 526 SMART PMEI_2 28 176 IPR006501 GO:0004857
Tpr3g4887 526 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Tpr3g4887 526 Pfam Plant invertase/pectin methylesterase inhibitor 32 176 IPR006501 GO:0004857
Tpr3g4887 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 180 IPR035513 -
Tpr3g4887 526 Pfam Pectinesterase 213 511 IPR000070 GO:0030599|GO:0042545
Tpr3g4887 526 CDD PMEI-like_3 35 182 - -
Tpr3g4887 526 PANTHER PECTINESTERASE 5 525 - -
Tpr3g4887 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 178 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4887 Tpr-Chr3 53532034 53534129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4887 27 526 Carbohydrate Esterase AT3G47400 55.899 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4887 K01051 - gmx:100806133 810.831