Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4881 ATGGCAACAAAGTTTACTCTTCTTTGCCTTATCTTCACTTTCCTAACAATTGCAACTTCAACACCAACAAATTTCATAAAATCCTCATGTAGCACAACATCATATCCAACACTTTGTGTTGAATCTCTCTCAAGCTATGCATCAACAATCCAACAAGATCCACACCAATTAGTCCAAACAGCTTTATCACTTACTCTCAACAAAACTCAATCCACCAAAAGCTTTGTAACAAAATGCAAAAGTTTTAAGAATCTTAAACCAAGAGAATATGCTGCTCTTCATGATTGTGTTGAAGAAATCACTGATAGTGTTGATAGACTTAGCCGTTCATTAAAAGAGCTTAAACTTTGCAAGGTTAGTGGTCAAGATTTCAATTGGCATATAAGCAATGTTGAGACATGGGTGAGCTCAGCTTTGACTGATGAAAGTACTTGTAGTGACGGATTTGGTGGAAAAGCACTTGATGGAAGAATGAAAACTTCTATTAGATCTAGAATGGTTAATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTTATCAACCAATATGCTACTAATCACTAG 564 0.3546 MATKFTLLCLIFTFLTIATSTPTNFIKSSCSTTSYPTLCVESLSSYASTIQQDPHQLVQTALSLTLNKTQSTKSFVTKCKSFKNLKPREYAALHDCVEEITDSVDRLSRSLKELKLCKVSGQDFNWHISNVETWVSSALTDESTCSDGFGGKALDGRMKTSIRSRMVNVAQVTSNALSLINQYATNH* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4881 187 CDD PMEI-like_3 28 185 - -
Tpr3g4881 187 SMART PMEI_2 21 179 IPR006501 GO:0004857
Tpr3g4881 187 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 8 186 - -
Tpr3g4881 187 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 183 IPR035513 -
Tpr3g4881 187 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 183 IPR006501 GO:0004857
Tpr3g4881 187 Pfam Plant invertase/pectin methylesterase inhibitor 24 179 IPR006501 GO:0004857
Tpr3g4881 187 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 183 IPR035513 -
Tpr3g4881 187 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4881 Tpr-Chr3 53506238 53507170 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4881 26 180 Carbohydrate Esterase AT3G14310 30.769 1.28e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4881 - - gmx:100305900 287.345