Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4880 ATGGCCAACAAACATCAAGGCAACAATTCTGTCTTGAAACTTTGTTGTTCATCAAACCGTGCTATAACCTTAATACAAAAAGTCATTGCAGAAATTATTGGTACATATTTTCTAGTCTTTGCCGGTTGTGGCGCCGTAGCAGTGAATAAAATCTATGGCTCAATCACTTTCCCAGGGATTTGTATCACTTGGGGGTTGATTGTAACCGTCATGTGTTACTCCGTTGGTCATATCTCTGGTGGCCTTTTCAATCCAGCCGTTGCCATAACTTGGGCCATCTTTCGCCGAATAACAATTCTAGAAGCTCCACTTTATATCGCAGCTGAGTTACTTGGCTCGACCCTCGCGAGTGTCACATTATCTCTAATGTTTGATATAACACCAAAATCTTATTTTGGAACGGTACCAGTTGGATCGGACGGTCAATCTCTAGTTGTCGAAATAATTATAAGTTTTTTGTTAATGTTTGTGATTTCAGCTGTTACAACAGATGATAGAGCGGTTGATGATTCCGCGAGTGTCGCGGTTGGAATGACAATAATGTTGAATCTTTTCATTGCCGGACCTGTATCTGGAGCATCGATGAATCCAGCACGAAGTATTGGTCCGGCAATTGTGATACATATTTATAAAGGGTTATGGATATATATAGTTGGTCCAATTGTTGGAGCCATAGCTGGAGCACTTGCTTATAACTTTCTTAGATCTGTTTACAAGCCACCTTCAGAGTTATCATCAGCAGATAAGTCACCATCAGAATTAGCAATAGATAAACAATCTTCAGAGATTACACCAGAACAACCATTGAGGAGCATAGTTGTAGATTGA 828 0.401 MANKHQGNNSVLKLCCSSNRAITLIQKVIAEIIGTYFLVFAGCGAVAVNKIYGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVAITWAIFRRITILEAPLYIAAELLGSTLASVTLSLMFDITPKSYFGTVPVGSDGQSLVVEIIISFLLMFVISAVTTDDRAVDDSASVAVGMTIMLNLFIAGPVSGASMNPARSIGPAIVIHIYKGLWIYIVGPIVGAIAGALAYNFLRSVYKPPSELSSADKSPSELAIDKQSSEITPEQPLRSIVVD* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4880 275 Pfam Major intrinsic protein 21 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PANTHER AQUAPORIN NIP4-1-RELATED 8 244 - -
Tpr3g4880 275 MobiDBLite consensus disorder prediction 244 267 - -
Tpr3g4880 275 SUPERFAMILY Aquaporin-like 23 242 IPR023271 -
Tpr3g4880 275 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PANTHER AQUAPORIN NIP2-1 8 244 IPR034294 -
Tpr3g4880 275 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr3g4880 275 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Tpr3g4880 275 MobiDBLite consensus disorder prediction 244 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4880 Tpr-Chr3 53496479 53497547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4880 16 262 Major Intrinsic Protein MIP AT5G37820 61.290 1.05e-107 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4880 K09874 - gmx:100791338 353.599