Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4849 ATGACCGAACTCACTAACAAAAACCCTTATCCTCCTCCAACCGCACTCTACTCTGACCTTCTTCATGATCCTAACCTCTTCACCGAAAAGCTTCAATCTTTTCATGATTCATTTGGTACCAAATTAAAGATTCCTACTATAGGGGGAAAGCCACTAGATCTACATCACCTTTTCGTTGAAGTAACATCTCGTGGTGGTATAGAAAAGGTGATTATAGATCGTAAATGGAAGGAAGTAGTTATGTCCTTCAAGTTCCGAGAGACCATAACAAGCGCATCATTCATGGTGCGCAAGTACTATCTATCATTGTTGTATCACTTTGAGCAAGCATATTATCTTTGCAAGCAAGTCCCTCCCTCAACACCTGATGCTATGAGTGAGAACCTTGCCAATAGCTCCACAACCAATAGAGAGGGTGCTGCTATCAATGATTCACCTGTTCAGGTCAATCCAGTACAGACACTTGGTTCTTTAGTTCGTGGAACAGTTGATGGGAAATTCGATGGTGGATATATAGTAACGGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTCCTAGTAATGCGTCTCCGAGTTCTTATACTGAAGGTACGCCTATTTCAAGGAAAAGAAAGAAATCAAGATTGGCATTAAGTGATCCATATCGTCCGAAATCAAACAGGAATGGTTACAATTTCTTTTTTGCTGAGAATTATGCCAGGCTAAAGCCTTCATTTTACGGCCAAGAGGGAGCAATTAACAAGAAAATTGGGGTTATGTGGAGAAATCTGACAGATGCAGAAAGACAGGTTTATCAGGAGAAAGGGAAAAGAGATAAAGAAAGATACAGGATTGAAATGTTGAAGTACAAATCCAACGGTTCAACTCCTCAATAG 888 0.4077 MTELTNKNPYPPPTALYSDLLHDPNLFTEKLQSFHDSFGTKLKIPTIGGKPLDLHHLFVEVTSRGGIEKVIIDRKWKEVVMSFKFRETITSASFMVRKYYLSLLYHFEQAYYLCKQVPPSTPDAMSENLANSSTTNREGAAINDSPVQVNPVQTLGSLVRGTVDGKFDGGYIVTVDLGSEQLKGVLYHVPSNASPSSYTEGTPISRKRKKSRLALSDPYRPKSNRNGYNFFFAENYARLKPSFYGQEGAINKKIGVMWRNLTDAERQVYQEKGKRDKERYRIEMLKYKSNGSTPQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4849 295 CDD ARID_HMGB9-like 23 108 IPR045303 GO:0003677
Tpr3g4849 295 SMART bright_3 22 113 IPR001606 GO:0003677
Tpr3g4849 295 Gene3D - 18 129 IPR036431 GO:0003677
Tpr3g4849 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 6 293 - -
Tpr3g4849 295 CDD HMGB-UBF_HMG-box 221 284 - -
Tpr3g4849 295 SUPERFAMILY HMG-box 208 291 IPR036910 -
Tpr3g4849 295 Pfam HMG (high mobility group) box 221 288 IPR009071 -
Tpr3g4849 295 MobiDBLite consensus disorder prediction 193 220 - -
Tpr3g4849 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 293 - -
Tpr3g4849 295 SMART ARID_2 18 108 - -
Tpr3g4849 295 SUPERFAMILY ARID-like 22 119 IPR036431 GO:0003677
Tpr3g4849 295 Gene3D High mobility group box domain 204 294 IPR036910 -
Tpr3g4849 295 SMART hmgende2 220 289 IPR009071 -
Tpr3g4849 295 Pfam ARID/BRIGHT DNA binding domain 26 108 IPR001606 GO:0003677
Tpr3g4849 295 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 221 288 IPR009071 -
Tpr3g4849 295 ProSiteProfiles ARID domain profile. 21 112 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4849 Tpr-Chr3 53277511 53281369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4849 15 290 ARID Transcription Factor Family AT3G13350 54.737 1.78e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr3g4849 ARID 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4849 - - adu:107491521 392.889