Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4846 ATGTCTATGTTACTAAGAAAAGTGTTGGAAATGTTGTTAAGACGCGATCCAACAACATGTTCAGATCAACAAGTGTTGTTTCCTCGTGGTGATTTGGGTGAATTGGATCAATTACCAACTGACATCTTATTTCAAATTTTGAGACTTTTGGGTCCCAAAGAAGTTGCAAAACTTAGTGTCATTTGCAAGTCTTTGAGATTCTTTGTATCGGATAATCGCTTATGGCTTCACTTTCTTCAAACTCATCAATCTGATCCATCTTGGGATTCTGTGTTTTTTGCTGAAACTAATTTGACTTTTGGTTACCCTCTTCCATCCCTTGTTGGCCAGAGGCCTCAGTTGTCATTCAAACATATTTATGGCGAAAGAGCACAGGTTCCTGGTGCTATTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGCTTGTCCATCGGGGCGATCTGCAACATTTTTGGAATTTGGCAACATTGAGTCGCCAATGTACACTAGACTTCGACATTTTTTCGCGACAATTTATAACAGGATGCAAGTGAAACCAAATAAACAACCTGTTATTGTTTCTATACCAATATGCCATTATGAAGATACTGAATCAGCTAGAGCATCGAGACGACAACTTAAAGACGCGATTTGTGCATCCCTGTTTGACTTGAATGTTCCTGCTGTTTGTGCCGTCAACCAGGCGACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCAGTAGTACCAATTTTTAACGGTAAAGTAATGCGCAAGATCGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAAGTTACAGGATTTCTTAAGGAGAAGATGCAACAGAACAACCTAAATTTTCAATCATTGTACACTGTACGCGCTTTGAAAGAGAATCTATGCTATGTTGCTCTTGATTATGAAGCCGAGCTATTAAAACAAAACACACAAGCATCATTTCAAGCTGAAGTAGATGGATGGTTTACACTTTCAAAAGAGCGGTTTCAGACAGCAGAGGTTTTATTCAAGCCACATCTTGCTGGAATGCAAGCCATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGAGCATTGCCATTCTGCAGAATTGCCAGGCGACAATGATTGGTACAAGACTGTAGTTTTATCTGGGGGAACTGCATGTTTGCCAGGTTTGGCAGAAAGATTAGAGAAGGAACTCCATGCTTTACTTCCTCCATACATGTCCAATGGAATTAGAGTCATGCCTCCTCCATACGGTGCCGATACTCAATGGTTCGGAGCAAAGATGATTGGCAATTTGAGCACATTTCCTGGTCCGTGGTGTGTGGAGAAAAAGAATTTCCGCCAGAAGCCTAGGCTCAGCCTCATATGGTGA 1407 0.4136 MSMLLRKVLEMLLRRDPTTCSDQQVLFPRGDLGELDQLPTDILFQILRLLGPKEVAKLSVICKSLRFFVSDNRLWLHFLQTHQSDPSWDSVFFAETNLTFGYPLPSLVGQRPQLSFKHIYGERAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSIPICHYEDTESARASRRQLKDAICASLFDLNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSVVPIFNGKVMRKIGVEVVGLGALKVTGFLKEKMQQNNLNFQSLYTVRALKENLCYVALDYEAELLKQNTQASFQAEVDGWFTLSKERFQTAEVLFKPHLAGMQAMGLHQAIALCMEHCHSAELPGDNDWYKTVVLSGGTACLPGLAERLEKELHALLPPYMSNGIRVMPPPYGADTQWFGAKMIGNLSTFPGPWCVEKKNFRQKPRLSLIW* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4846 468 SUPERFAMILY F-box domain 29 90 IPR036047 GO:0005515
Tpr3g4846 468 Gene3D - 234 433 - -
Tpr3g4846 468 Gene3D - 24 102 - -
Tpr3g4846 468 Gene3D - 172 459 - -
Tpr3g4846 468 PANTHER ACTIN 82 465 IPR004000 -
Tpr3g4846 468 SUPERFAMILY Actin-like ATPase domain 243 452 IPR043129 -
Tpr3g4846 468 PANTHER MACRONUCLEAR ACTIN 82 465 - -
Tpr3g4846 468 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Tpr3g4846 468 Pfam Actin 176 456 IPR004000 -
Tpr3g4846 468 Gene3D Actin; Chain A, domain 4 277 361 - -
Tpr3g4846 468 SMART actin_3 127 458 IPR004000 -
Tpr3g4846 468 SUPERFAMILY Actin-like ATPase domain 128 249 IPR043129 -
Tpr3g4846 468 SMART fbox_2 38 78 IPR001810 GO:0005515
Tpr3g4846 468 CDD NBD_sugar-kinase_HSP70_actin 130 274 - -
Tpr3g4846 468 Pfam F-box domain 35 76 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4846 Tpr-Chr3 53255307 53260458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4846 176 464 Cytoskeleton Gene Families AT3G12110 32.432 5.25e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4846 K16616 - gmx:100791973 775.778