Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4821 ATGTACCATTATACCAATGTTGCTGTTATTACAACCTTTCTTGGTCATTTTATAGTACCCTTAAAATCATCAAAGCAAGTTCTCATCATGGATATAGATCTCAGGTTACCCTCTGGTGAACATGATAAAGAAGAAGAAGAAACAACTACACTTGATAACATGTTGGAGGGTGAAGAAAAATTGCACAATGGAGATATTGATGGAAGGCATATGGTTGATGCTGGCATTGAACTACATGCTCTAAATGGTGGAGATTTGAATTCCCCCACGGTTGATATGGTGATGTTCAAGGAAGATACAAATCTTGAACCACTTTTTGGCATGGAATTCGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGGTCAATGGGGTTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTCATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACCAAAAGAGAGTATGATAAATCCTTCAATCGACCACGAGCACGACAGCATAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACCGATTGCAAAGCAAGCATGCATGTAAAAAGAAGGCCAGATGGGAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCACGAGCTTTTACCTGCCCAGGCAGTAAGTGAGCAAACAAGAAAAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAGACTGTGGTTGGTGTCAAGAATGAAAAGAATCAATTCGATAAAGGTCGGAATTTGGGTCTGGAGTTTGTGGAGGCCAAACTTATGCTTGATTTTTTTATTCAGATGCAAAGCATGAACTCCAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGTACTTTTTGTTGGGGTGAACCAGCACTACCAATTTATATTACTCGGGTGTGCCTTGATATCAGATGAAAGTGCAGCAACATTTTCTTGGCTATTACGGACGTGGCTGAAAGGTGTTGGTGGCCAAGTTCCAAAAGTGATCATTACGGACCATGACATGACTTTGAAGTCAGTTATTTCAGATGTAATTCCCAGTGCTTGTCATTGTGTTTGCTTATGGCATATACTGGGGAAGGTATCTGAAAATCTAGCTCATGTAATTAAAAAACATGTGAATTTTATGACAAAATTTGAAAAATGCGTATTTAGGTCATTAACCAGTGATGATTTTGACAATAGATGGGAGAAAATTTTGGATAGATTTGAGCTTCGACAGGATGAATGCATGCAGTCTTTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTGTTTTTAGGTGGCATGTCTACTCCCCAACGATCTGAAAGTGTAAATTCATTCTTTGACAAATATGTTCACAGGAAGACCTATATACAAGATTTTGTTAAACAGTATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCAAAGGCAGATTCTGATACTTGGAACAAAGTAGCAACATTAAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCAGGGATTTTCACCCATACAGTATTCAAGAAGATTCAAGCTGAGATTATTGGTGCAGTGGCTTGCCATCCTAAACTTGACAGGCAGGATGAGACAACCATTGTTCACAGGGTGCATGATATGGAAACAAGAAAAGACTTTTTTGTTGTGGTGAATGAAGTAAATTCAGAGTTGTCTTGTATATGTCGGCAATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATATTCTGGCCATTCGGTGTTCCCATCTCAATATGTTTTGAAGCGGTGGACAAAAGATGCAAAGATCAGAAACGTAACAGGGGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGATACAATGATTTATGTCATCGATCACTAAAACTGAGCGAAGAGGGATCATTGTCTCAAGATAGTTATGGTATTGCATTCCATGCACTAAATGAGGCGCACAAAAATTGTGTGAGTGTTAACAATTCTAGCAAGAGTCCTACAGAAGCTGGTACATCAGGGGTTCATGGCCAGCTTTCCATTGAAGAAGATACCCAAAGTAGAAATATGGGAAAGTCGAACAAAAAGAAAAATCCAACTAAAAAGAAAAAGGTGAACTCAGAGGCAGAAGTGATGACTGTCGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAGCGCAAGAACTGCAGTACTTGAAGGTTATTATGGCACACAACAGAGTGTGCAGGGAATGTTGAACTTAATGGGACCAACACGTGATGATTACTACGGGAATCAACAGACTCTTCAGGGACTGGGACCAATAAATTCCATACCAACTAGCCACGATGGTTATTATGGTGCACACCAAAGCATGCCCGGTTTGGCACAACTGGATTTTTTGCGAACTGGTTTCACATATGGAATTAGGGATGATCCTAATGTGAGAGCAGCACAGTTACACGAGGATCCATCAAGACACGCGTGA 2616 0.3953 MYHYTNVAVITTFLGHFIVPLKSSKQVLIMDIDLRLPSGEHDKEEEETTTLDNMLEGEEKLHNGDIDGRHMVDAGIELHALNGGDLNSPTVDMVMFKEDTNLEPLFGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQHKQESENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAVMARQFAEYKTVVGVKNEKNQFDKGRNLGLEFVEAKLMLDFFIQMQSMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLVLFVGVNQHYQFILLGCALISDESAATFSWLLRTWLKGVGGQVPKVIITDHDMTLKSVISDVIPSACHCVCLWHILGKVSENLAHVIKKHVNFMTKFEKCVFRSLTSDDFDNRWEKILDRFELRQDECMQSLYEDRKLWAPTFMKDVFLGGMSTPQRSESVNSFFDKYVHRKTYIQDFVKQYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGIFTHTVFKKIQAEIIGAVACHPKLDRQDETTIVHRVHDMETRKDFFVVVNEVNSELSCICRQFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKIRNVTGEESEHMLARVQRYNDLCHRSLKLSEEGSLSQDSYGIAFHALNEAHKNCVSVNNSSKSPTEAGTSGVHGQLSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMDKFSARTAVLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPINSIPTSHDGYYGAHQSMPGLAQLDFLRTGFTYGIRDDPNVRAAQLHEDPSRHA* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4821 871 ProSiteProfiles Zinc finger SWIM-type profile. 597 633 IPR007527 GO:0008270
Tpr3g4821 871 Pfam MULE transposase domain 317 409 IPR018289 -
Tpr3g4821 871 Pfam FAR1 DNA-binding domain 118 220 IPR004330 -
Tpr3g4821 871 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 76 810 IPR031052 GO:0006355
Tpr3g4821 871 MobiDBLite consensus disorder prediction 708 735 - -
Tpr3g4821 871 MobiDBLite consensus disorder prediction 161 193 - -
Tpr3g4821 871 SMART 26again6 608 635 IPR006564 GO:0008270
Tpr3g4821 871 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 76 810 - -
Tpr3g4821 871 MobiDBLite consensus disorder prediction 708 755 - -
Tpr3g4821 871 Pfam SWIM zinc finger 598 631 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4821 Tpr-Chr3 53058993 53065991 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr3g4821 FAR1 3.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4821 - - cam:101505784 1598.56