Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4819 ATGATGAAGTTGATAAAAGAATCTCTTACTAATATTACATATTTCTATCCAATGAAAGAAACATCGAATTCGGACCGTTTGTCTATGGCTAGGATAAGTCTTGGATCCAAGGGAAGCAAGATACAACTCTTAACTAACCATTTTAGAGTTGGCCTTAGCAAGAACAATGGCTACTTCTATCACTATAATGTCGCTTTATGTTATCAAGATGGACACTTGGTTGAAGTGAAAGGTACGAGGAGAAAAGTCATAGACAAACTTTGTGAAACGTATGATGTATTAAAACACAAGAATTTTGCATACGATGGCGACAAAAGCTTATTCGCTCTTGGTTCTCTACATCATAATAAACAAGAATTCATTGTTGTGTTAGAAGAAGTTTCATCAATGAGGGTTGGAAGAAACCCCTATGAAGCAACCAAGAAAATGAGGCGTCAATCTCGGTCTAAAACTTTTAAGGTTGAGATTACATATTTAGCTAAAATCCCATTACAAGCGATTGCAAATGTAGTACAAGGTCGAGAATCTGAGCATTATCAAGAAGTATTGAATGTTCTAGACGTAATATTGAGCCAGAATGCGACAAAGCAGGGGTGTCTTCGTATTCGCCAATCATACTTTAATGATAATCCAAGGAATATTACAAATATCGATGGTGGTGTTCAATGTTGTCGCGGTTACCATTCCAGCTTCAAAGTCACACAAAAGGGTTTATCTCTCAATGTTGATGTGTCAACTACATTACTTTTAAAGCCTGGTCCTGTAGTGGATTTCCTTCTCCAGAACCAAAATGTTCAGCAAACAAACTTGATTGATTGGACCAAGGCAAGAAGAATGCTGAAAAATATTAGAATCAAGGCTAACAATAGAGAGTACAAAATCACTGGACTAAGTGAAATGTCTTGCAGGACAGAAAAATTTTTAATTAAAAATGGAAATGATGTTAATGGTCAAATGAAATTAAGTGAAATAACAGTTTATGAATACTTCAAACACAAGAAAAATATTGAACTCAACTATTCTATTGATATGCCATGCATCAATGTTGGCAAATCAAAGAATCCAACTTATTTTCCTATTGAGTTATGCACATTAGTCTCGTTACAACGATACACTAGGGTACTGTCAAATAAGCAAAGAGCTCAAATGATGTTGCAGTCGAAGAATAGTCCTCATGAAAGAAAAGAAGCTTTGCAATATTCTTTAAAAAATAGTAGATATGACTCTGAGCCTATGTTTCGCTCTTTCGGAATTACTATTGAACCTTGTTTTACTCAAGTCGATGGTCGTGTTTTGCAACCTCCAACGGTTGTTGTCGGAAGCGGGCTTAACATTTGTCCCCGAAATGGGAGCTGGAATTTGAATGATAAGAAACTAGTTGAACCTGTGGAGATTAAGCGTTGGGCCATTGTAAACTTTTCATCGCGGTGTGCTGTAAAACATTTGGGCAGTTTGATTAAAAAATGCTCTGAAATGAAAGGGATGCTCATACATCGTCCGTTCGATGTATTTGAAGAGGACAGTCGCTATAGAAGTGAGTCGCCATCTTCTAGGGTTGCTAGAATGTATGAAAAGTTAAAGGCCAAGATGCCTGGACCCCCTAAGGATCCTCCGGCTCAACTTCTTTTGTGTATCCTACCGGTTAAGAATTGTGAGCTTTATGGTCCTTGGAAAAGGAAATGTCTTGTTGATGAAGGAATTGCAACACAATGCATTGCTCCAACACAAAATATTAATGATCATTACATTAATAATGTACTATTGAAAATCAATGCAAAGCTTGGTGGGATGAATTCATTATTGTTATCCGAAGTTACGCGTTCCATACCATTGTTTTCTAACATACCTACATTGGTTATCGGAATGGATGTTTCACATGGATCTTCGTATCAATCAAATGTTCCGTCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCACGTTACAAAGCTGTAGTCCGCGCACAGCCATCAAAAGTAGAGATGATTACATCTCTATTCAAGCCTGTTTCAGATGCTAAGGATGACGGTATCATCTGTGAGTTGCTTAAGGACTTCCGCGCAACTTCAGGAATGAAGCCTAAACAAATTATAATTTTCAGGGATGGAGTGAGTGATTCACAGTTCAACCAGGTTCTCGACATTGAATTAGAAGAAATCATAAAGGCATGCAAACATTTAGATGAAAATTGGTGTCCAAAGTTTACTGTGATTGTTGCTCAGAAGAATCACCATACTAGATTCTTCAAACCCAATGCTCCTCAAGAAAATGTTTCACCTGGAACTGTTATTGATAACACTATATGTAATCCCAAAAACAATGACTTCTACATGTGTGCACATGCTGGAAGGATTGGTACAAGTCGCCCTACTCATTACCATCTTTTATTTGATGAAATTGGATTCTCAGCAGATAATTTGCAAGAATTAGTGCATTCTCTATGTTATGTGCACCAGAGGAGCACAAGTGCCATATCAATAGTTGCACCAATATATTATGCTGACCTAGCAGCTGCTCAGATGGCACATTTGATGAAATTTGATGAGTCAGAGACTCTTTCCAGCCACAATGAATCCACCTCTGCAGATATATCTCAAGTTCTCGAGTTACCACGTCTTCATGAACGAGTTGCCAATTCTATGTTTTTTTGTTAG 2664 0.3758 MMKLIKESLTNITYFYPMKETSNSDRLSMARISLGSKGSKIQLLTNHFRVGLSKNNGYFYHYNVALCYQDGHLVEVKGTRRKVIDKLCETYDVLKHKNFAYDGDKSLFALGSLHHNKQEFIVVLEEVSSMRVGRNPYEATKKMRRQSRSKTFKVEITYLAKIPLQAIANVVQGRESEHYQEVLNVLDVILSQNATKQGCLRIRQSYFNDNPRNITNIDGGVQCCRGYHSSFKVTQKGLSLNVDVSTTLLLKPGPVVDFLLQNQNVQQTNLIDWTKARRMLKNIRIKANNREYKITGLSEMSCRTEKFLIKNGNDVNGQMKLSEITVYEYFKHKKNIELNYSIDMPCINVGKSKNPTYFPIELCTLVSLQRYTRVLSNKQRAQMMLQSKNSPHERKEALQYSLKNSRYDSEPMFRSFGITIEPCFTQVDGRVLQPPTVVVGSGLNICPRNGSWNLNDKKLVEPVEIKRWAIVNFSSRCAVKHLGSLIKKCSEMKGMLIHRPFDVFEEDSRYRSESPSSRVARMYEKLKAKMPGPPKDPPAQLLLCILPVKNCELYGPWKRKCLVDEGIATQCIAPTQNINDHYINNVLLKINAKLGGMNSLLLSEVTRSIPLFSNIPTLVIGMDVSHGSSYQSNVPSIAAVVSSRYWPQISRYKAVVRAQPSKVEMITSLFKPVSDAKDDGIICELLKDFRATSGMKPKQIIIFRDGVSDSQFNQVLDIELEEIIKACKHLDENWCPKFTVIVAQKNHHTRFFKPNAPQENVSPGTVIDNTICNPKNNDFYMCAHAGRIGTSRPTHYHLLFDEIGFSADNLQELVHSLCYVHQRSTSAISIVAPIYYADLAAAQMAHLMKFDESETLSSHNESTSADISQVLELPRLHERVANSMFFC* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4819 887 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 17 886 - -
Tpr3g4819 887 CDD PAZ_argonaute_like 252 366 - -
Tpr3g4819 887 SUPERFAMILY PAZ domain 247 407 IPR036085 GO:0005515
Tpr3g4819 887 Pfam Argonaute linker 2 domain 393 437 IPR032472 -
Tpr3g4819 887 Pfam Mid domain of argonaute 447 480 IPR032473 -
Tpr3g4819 887 Gene3D - 608 887 IPR036397 GO:0003676
Tpr3g4819 887 SMART Piwi_a_2 541 849 IPR003165 GO:0003676
Tpr3g4819 887 SUPERFAMILY Ribonuclease H-like 536 847 IPR012337 -
Tpr3g4819 887 Pfam Piwi domain 542 849 IPR003165 GO:0003676
Tpr3g4819 887 SMART DUF1785_2 200 252 IPR014811 -
Tpr3g4819 887 Pfam N-terminal domain of argonaute 40 190 IPR032474 -
Tpr3g4819 887 ProSiteProfiles Piwi domain profile. 541 849 IPR003165 GO:0003676
Tpr3g4819 887 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 17 886 - -
Tpr3g4819 887 Pfam PAZ domain 256 384 IPR003100 GO:0005515
Tpr3g4819 887 CDD Piwi_ago-like 411 843 IPR045246 -
Tpr3g4819 887 Gene3D paz domain 246 371 - -
Tpr3g4819 887 Pfam Argonaute linker 1 domain 202 248 IPR014811 -
Tpr3g4819 887 ProSiteProfiles PAZ domain profile. 290 367 IPR003100 GO:0005515
Tpr3g4819 887 Gene3D - 431 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4819 Tpr-Chr3 53044874 53050367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4819 31 887 Eukaryotic Initiation Factors Gene Family AT5G43810 33.222 2.58e-152 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4819 K11593 - pop:7486850 1051.58