Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4807 ATGTCAACCAAGAAGAAACAAAAACGCAAAAACAACGATAGCGATGAAGACGACGTTTTCTACTACCGCTACCCCACCGCCACCGCCACCGCCACCGCCACATCCAATAACCAAATCCAATCAAAATCAAACAACAAAGCATCATCGATAATATCGACAACAGGTGAATCCTTAGCACCATCAAAATCAACACTATATGTTTCAAATCTAGATTACTCCTTAACAAACTCCGATCTCCACACTCTCTTTTCGACTTTCGGCCGAATCGCGCGTGTAACGGTTCTTAAAGACCGTCACACGCGCCTCAGCCGTGGTGTTGCGTTTATTCAGTTTGTTTTGCGTCAGGATGCGCAACGCGCTGTGACGGAAATGAATAAGAAGATTTTGAATGGACGGACTTTGACGGTGTCGATTGCTGCTGATAATGGACGCGCGCCGGAGTTTATTAAGAAGCGCGTGTATAATTCGGAGACTGGTTTGTGTTTTGAGTGTGGGGAGCATGGTCATTTGTCTTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGGAGCGGCCGCAGCCTAAGAAGCCGAGGCGTGGGTTTGGCGGGTTTAGGGATAGACTGGAAGGTAATGATGATGATGAGGATGAGGAGGAGGAAGATGATGGACAGTTTGAGCAATATAGTTGGGCTTCCATTGTGGATTGA 687 0.4716 MSTKKKQKRKNNDSDEDDVFYYRYPTATATATATSNNQIQSKSNNKASSIISTTGESLAPSKSTLYVSNLDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVLRQDAQRAVTEMNKKILNGRTLTVSIAADNGRAPEFIKKRVYNSETGLCFECGEHGHLSYECPKNQLGPRERPQPKKPRRGFGGFRDRLEGNDDDEDEEEEDDGQFEQYSWASIVD* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4807 228 MobiDBLite consensus disorder prediction 203 218 - -
Tpr3g4807 228 SUPERFAMILY RNA-binding domain, RBD 59 145 IPR035979 GO:0003676
Tpr3g4807 228 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 228 - -
Tpr3g4807 228 Gene3D - 29 221 IPR012677 -
Tpr3g4807 228 Gene3D - 151 190 - -
Tpr3g4807 228 SUPERFAMILY Retrovirus zinc finger-like domains 152 177 IPR036875 GO:0003676|GO:0008270
Tpr3g4807 228 SMART c2hcfinal6 160 176 IPR001878 GO:0003676|GO:0008270
Tpr3g4807 228 ProSiteProfiles Zinc finger CCHC-type profile. 161 176 IPR001878 GO:0003676|GO:0008270
Tpr3g4807 228 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 228 IPR044598 GO:0000398|GO:0005689
Tpr3g4807 228 CDD RRM_ZCRB1 62 139 IPR034219 -
Tpr3g4807 228 MobiDBLite consensus disorder prediction 182 202 - -
Tpr3g4807 228 MobiDBLite consensus disorder prediction 176 228 - -
Tpr3g4807 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Tpr3g4807 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Tpr3g4807 228 SMART rrm1_1 64 137 IPR000504 GO:0003723
Tpr3g4807 228 Pfam Zinc knuckle 160 176 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4807 Tpr-Chr3 52907976 52910809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4807 63 155 Eukaryotic Initiation Factors Gene Family AT1G49760 36.559 1.74e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4807 K13154 - gmx:100814914 269.626