Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4806 ATGTCAGCCAAGAAGAAACACAAACGCAAAAACAACGATAGCGATGAAGACGACGACGTTTTCTACTACCGCTACCCCACCGCCACCGCCACCGCCACCGCCACATCCAATAACCAAATCCAATCAAAATCAAACAACAAAGCATCGTCAATTATATCAACAACAGGTGAATCCTTAGCACCATCAAAATCAACACTATACGTTTCAAATCTAGATTACTCCTTAACAAACTCCGATCTCCACACTCTCTTTTTGACTTTCGGTCGAATAGCGCGTGTAACGGTTCTTAAAGACCGTCACACGCGCCTTAGCCGCGGTGTTGCGTTTATTCAATTTGTTTTGCGTCAGGATGCGCAACGCGCTGTGACGGAAATGAATAAGAAGATTTTGAATGGACGGACTTTGACGGCGTCGATTGCGGCTGATAATGGACGCGCGCCGGAGTTTATTAAGAAGCGCGTGTATAATTCGGAGACTGGTCTGTGTTTTGAGTGTGGGGAACATGGTCATTTGTCTTATGAGTGTCCTAAGAATCAGTTGGGGCCGAGGGAGCGGCCGCAGCCTAAGAAGCCGAGGCGTGGGCTTGGTGGGTTTAGGGATAGACAGGAGGGTAATGATGATGATGAGGAGGAGGAGGAAGAGGATGGGCGGTTTGAGCAAGATAATTGGGCTTCCGTTGTGGATGGTGGAGCTGGTGGAGCAGGTGAGAGGTTGTTGGAGAGGTATGGAAATGATGATGAGGCTTTGGTTGACAAGAATAGGAAGAAGAAGAAGAAGAAGAAAGGGAAGATAGGTGGGTATTTTAGTGATGAGAGCGATCATGATGACGATGATTGA 837 0.4743 MSAKKKHKRKNNDSDEDDDVFYYRYPTATATATATSNNQIQSKSNNKASSIISTTGESLAPSKSTLYVSNLDYSLTNSDLHTLFLTFGRIARVTVLKDRHTRLSRGVAFIQFVLRQDAQRAVTEMNKKILNGRTLTASIAADNGRAPEFIKKRVYNSETGLCFECGEHGHLSYECPKNQLGPRERPQPKKPRRGLGGFRDRQEGNDDDEEEEEEDGRFEQDNWASVVDGGAGGAGERLLERYGNDDEALVDKNRKKKKKKKGKIGGYFSDESDHDDDD* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4806 278 Gene3D - 152 191 - -
Tpr3g4806 278 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
Tpr3g4806 278 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 276 - -
Tpr3g4806 278 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 12 276 IPR044598 GO:0000398|GO:0005689
Tpr3g4806 278 SUPERFAMILY RNA-binding domain, RBD 60 146 IPR035979 GO:0003676
Tpr3g4806 278 MobiDBLite consensus disorder prediction 177 278 - -
Tpr3g4806 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 135 IPR000504 GO:0003723
Tpr3g4806 278 Pfam Zinc knuckle 161 177 IPR001878 GO:0003676|GO:0008270
Tpr3g4806 278 SUPERFAMILY Retrovirus zinc finger-like domains 153 178 IPR036875 GO:0003676|GO:0008270
Tpr3g4806 278 MobiDBLite consensus disorder prediction 239 253 - -
Tpr3g4806 278 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Tpr3g4806 278 MobiDBLite consensus disorder prediction 204 218 - -
Tpr3g4806 278 SMART rrm1_1 65 138 IPR000504 GO:0003723
Tpr3g4806 278 Gene3D - 29 221 IPR012677 -
Tpr3g4806 278 CDD RRM_ZCRB1 63 140 IPR034219 -
Tpr3g4806 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Tpr3g4806 278 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4806 Tpr-Chr3 52902465 52905251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4806 64 140 Eukaryotic Initiation Factors Gene Family AT1G49760 40.260 3.04e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4806 K13154 - gmx:100814914 291.967