Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4798 ATGGGTTTTGAACCATTGATTTGGTACTGCAAGCCTGAACCAAATAGTATTTGGGAAAAAATAGTAGATAGTGCTTTTGGATCTTATACACCATGTGCAATCAACACTCTTGTTATCTCAATCTCAAATTTGGTTCTTATGTGTCTTTGCTTATATAGAATATGGCTTATTGCTTTCAATGCCAAAGCTCAAAGGTTTTGTTTGAAATCAAATTACTATAATTATATTCTTGGAATGTTGGCTAGTTATTGTGCTTTTCAACCTTTGTTGAGATTGTTCACTGGAAATTCAGCCTTCAACCTGAATCAGGAAACTGATTTTGCTCCTTTTGAGATAACATCTTTGATCATTGAATCACTTACTTGGTTCTCAATGATAATTCTCATACTCTTGGAAACCAAGGTTTATATTAGGCAATCTAGGTGGTTGGTGAGGTTTGGAGTTATTTATGTTTTGGTGGGAGATATTGTAATGTTTGGAGTTATTCTGTCAGTGAAAGATTACTCTAGCAGATCTTCCCTATATCTGTATCTCAGCACTATTATCTGCCAGGTGTTGTTTGGTACATTACTTCTAGTTTACATTCCTAATTTGGTTCCATATTCTGGTCATACAACAATACAAGCTGAGATACCTGACAATGGAGAATATGAACCACTTTGCGGAGACGATCAAGTTTGTCCCGAGATGCGTGCCAACTTTTTATCTAGATTAAGTTTTGGATGGATAACGCCGCTGATGAAACAAGGCTACAGAAAACCAGTCACCGAAAAGGATGTTTGGAAGCTAGACAAATGGGATCAAACTGAGACATTAAATGAAAAGTTCCAAAAGTGTTGGAATACAGAATTTGAAAGCTCTAACCCCTGGCTTTTAAGAGCATTAAACAGTAGTCTAGGGAAAAGGTTTTGGTTTGGAGGCATCTTTAAGATTGGTAATGATCTTTCTCAATTTGTGGGACCAATTTTGCTGAACCATCTCTTAACTTCAATGCAAAATGGAGATCCGTCTTGGATCGGTTACATCTACGCCTTCTCCATATTTGTTGGAGTGTCAGTTGGTGTTCTATGTGAGGCACAGTATTTCCAGAATGTTATGCGCGTTGGTTTTCGCCTTAGGTCAACATTGGTGGCTGCTATATTCAGAAAGTCTTTGAGACTAACTCATGAAAGTAGAAAGAAGTTCTCAATGGGGAAGCTTATGAATATGATAACAACTGATGCCAATGCATTACAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTTCGAATCACCATAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTCATCGGATCGCTAATGCTAGTTCTCATTATTCCACTACAGACATTTGTGATTAGCAAAATGAGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGAGTCGGTCTGATGAACGAAATTCTTTCTGCCATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATTCGACATGAGGAACTATCATGGTTCCGCAAAGCGCAGCTTCTATATGCTATAAACAGTTTTATACTGAACAGCATTCCAGTTCTTGTGACAGTAACTTCCTTTGGAATGTTTACTTTACTTGGTGGAGAATTGACACCTTCAAGAGCATTCACCTCACTATCGCTGTTTTCGGTTTTGCGCTTTCCTTTAAATATGCTTCCAAATTTACTAAGTCAGGTAGCAAATGCAAATGTCTCCTTGCAACGTTTGGAGGAACTGTTTTCGGCTGAGGAACGAAATTTACAACAGAATCCACCAATTGTTCCAGGACTTCCAGCCATATCAATAAAAAATGGAGATTTTTCGTGGGATCCTAAGGCAGAGAAGGCTACATTGTCAAACATCAATGTTGAAATACCAGTTGGAAGCTTAGTTGCAATTATCGGAGGTACCGGAGAAGGGAAAACATCGCTTATTTCAGCAATGCTTGGAGAGCTACCTCTTGTATCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTTCGCGAAAATATATTATTTGGATCAAAATTCGATCATGGACGGTATTGGAAGGCCATCGATGTCACTTCTTTGGAACATGATCTCAACTTTTTACCTGGACGCGATTTTACCGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGGGCTGTATACTCAAATTCTGATGTATATATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATATTGCCCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCAAGGAAAAACGAGGGTTCTTGTTACCAACCAGCTTCATTTTCTCCCTCAGGTGGATAAAATTATTCTTGTTAATGAAGGCATGATTAAGGAACAAGGAACGTTCGAGGAGTTGTCGAAATGTGGTCCTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGAAGTCGATAGTAATTACGAAGATACAGATAGTCATGAAAAGACTGATGTTATACCCTTGAATAATGATGCAATTGTAGAATTACCAAATGATACAAACTATGAGAAGAAGGGAAAATTGCGAAAATCGGTACTTGTTAAGAAAGAAGAGAGGGAGACAGGCGTGGTTAGCTGGAAAGTTTTAACGAGGTACACATCGGCTTTGGGAGGACTGTGGGTAGTTTCTATACTTTTTGCATGCTACACATTAACAGAAGCTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCAACTGCAGCTTCTCGAGCCGGATATTTTCTTATCATCTATGCAATTTTTTCAATTGGACAGGTATCTGTGGCACTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGTGCTGCGAAAAAATTGCATGATGCAATGCTAGATAAAATCCTACGCGCTCCAATGGTATTTTTCCAGACTAATCCTGTCGGCCGAATAATTAATAGATTTGCGAAAGACACGGGAGACATTGATACCAATGTTTTTAATTTGATGAATTCGTTTCTGGGGCAAGTCTGGCAACTACTTTCAACATTTGTTCTTATAGGTACTGTGAGCACCATATCCCTGTGGGCCATAATGCCACTTCTGATATTCTTTTATGCTGCTTATATATACTACCAGAGCACAGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCGCCTGTTTATGCACATTTTGGAGAATCATTGAACGGTTTGTCGAGCATTCGGGCTTACAAAGCGTATGACAGGATGTCAAACATCAACGGAAGTTTCATGGATAACAATATCAGATTTACTCTTGTGAATATTAGTTCGAACCGTTGGTTAACCATAAGGTTAGAAAGCTTAGGAGGCCTCATGATTTGGTTGATAGCAACATTTGCTGTGTTACAAAATGCAAGATCTGAAAACCCTGCAATGATTGCATCTACAATGGGTCTACTTCTCAGTTATACATTGAACATAACAAATCTCTTGAGCGGTGTACTTAGACAAGCGAGTAGAGCTGAAAACAGTTTAAATTCGGTCGAACGTGTTGACACGTATATAAATTTAGAAACTGAGGGTCAAAGTATAATTGAGACCAACCGTCCACCACCAGGATGGCCAACAAAAGGATCAATTGAGTTTGAGAATGTTGTTCTGAGGTATAGGCCGGAACTTCCCCCGGTCCTGCATGGATTGTCCTTTGTAGTGCCTTCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTCCGGATTGTTGAACTACAAAGTGGAAGAATCATTATAGATGGTTATGATATTTCTACGTTCGGTCTAGTAGATCTGCGAAGAGTTCTTACTATCATACCACAGTCGCCGGTTCTTTTCTCTGGTACTGTTCGTTTCAATCTCGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAAGATGTAATAAGAAGAAATTCACTTGGTCTAGATGCTCAGGTTTCTGAAGGAGGTGACAATTTCAGCGTCGGACAAAGGCAACTATTAAGTCTAGCGAGAGCGTTGCTAAGAAGATCAAAGGTTCTTGTCCTTGATGAAGCTACGGCTGCTGTAGATGTTAGAACCGATGCACTTATACAGAAAACTATCAGACAAGAATTCCATTCCTGCACAATGCTCATCATTGCACATAGATTGAATACAGTTATCGACTGCAACCGGATTCTGTTGCTAGATGCTGGCAAGGTTCTTGAATACAATTCACCAGAGAAACTCTTACAAAATGAAGAAACTGCATTCTACAAAATGGTTCAAAGTACTGGACCTGCAAATGCTGAGTATTTATGTAGCTTAGTGTTTGAAAGAAAAGAGAACAATTCAAATGAATATAACAAGGAGTCGGAAAACCGTCTAAGACTGTTAGCATCGACAAATTGGGCTGCTGCTACACAATTTGCAATATCTTCTAGTCTTTCTTCTTTACATCAACATCTTCAAAGTCCAAATACTAAAGACAATAAAGACATTCTTAATAGAACAAAGGATGCAGTAATTACACTTCAAGAAGTTCTAGAGGGAAAGCATGATGAAACTATAGAAGAGACATTGACTCAATATCATGTCCCTACAGATAGATGGTGGTCTACTCTCTATAAAGTTATTGAAGGTCTAGCTCTCTTGATCAAGTTGCCTCAAGACAACTTTCAACAATTAGAACCTGTTTTTGAAGGGAGATCATTTGACTAA 4854 0.3881 MGFEPLIWYCKPEPNSIWEKIVDSAFGSYTPCAINTLVISISNLVLMCLCLYRIWLIAFNAKAQRFCLKSNYYNYILGMLASYCAFQPLLRLFTGNSAFNLNQETDFAPFEITSLIIESLTWFSMIILILLETKVYIRQSRWLVRFGVIYVLVGDIVMFGVILSVKDYSSRSSLYLYLSTIICQVLFGTLLLVYIPNLVPYSGHTTIQAEIPDNGEYEPLCGDDQVCPEMRANFLSRLSFGWITPLMKQGYRKPVTEKDVWKLDKWDQTETLNEKFQKCWNTEFESSNPWLLRALNSSLGKRFWFGGIFKIGNDLSQFVGPILLNHLLTSMQNGDPSWIGYIYAFSIFVGVSVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHESRKKFSMGKLMNMITTDANALQQICQQLHGLWSAPFRITIAMVLLYQQLGVASLIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILSAMDTVKCYAWETSFQSRIQSIRHEELSWFRKAQLLYAINSFILNSIPVLVTVTSFGMFTLLGGELTPSRAFTSLSLFSVLRFPLNMLPNLLSQVANANVSLQRLEELFSAEERNLQQNPPIVPGLPAISIKNGDFSWDPKAEKATLSNINVEIPVGSLVAIIGGTGEGKTSLISAMLGELPLVSDGNATIRGTVAYVPQISWIYNATVRENILFGSKFDHGRYWKAIDVTSLEHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVNEGMIKEQGTFEELSKCGPLFQKLMENAGKMEQEVDSNYEDTDSHEKTDVIPLNNDAIVELPNDTNYEKKGKLRKSVLVKKEERETGVVSWKVLTRYTSALGGLWVVSILFACYTLTEALRISSSTWLSVWTSQDSTAASRAGYFLIIYAIFSIGQVSVALANSYWLIISSLRAAKKLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFNLMNSFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMSNINGSFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNARSENPAMIASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEGQSIIETNRPPPGWPTKGSIEFENVVLRYRPELPPVLHGLSFVVPSTEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGYDISTFGLVDLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFHSCTMLIIAHRLNTVIDCNRILLLDAGKVLEYNSPEKLLQNEETAFYKMVQSTGPANAEYLCSLVFERKENNSNEYNKESENRLRLLASTNWAAATQFAISSSLSSLHQHLQSPNTKDNKDILNRTKDAVITLQEVLEGKHDETIEETLTQYHVPTDRWWSTLYKVIEGLALLIKLPQDNFQQLEPVFEGRSFD* 1618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4798 1617 Pfam ABC transporter transmembrane region 304 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr3g4798 1617 Pfam ABC transporter transmembrane region 921 1182 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr3g4798 1617 CDD ABCC_MRP_domain1 615 815 - -
Tpr3g4798 1617 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 839 IPR003439 GO:0005524
Tpr3g4798 1617 CDD ABCC_MRP_domain2 1238 1458 - -
Tpr3g4798 1617 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Tpr3g4798 1617 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1495 - -
Tpr3g4798 1617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1230 1473 IPR027417 -
Tpr3g4798 1617 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1474 IPR003439 GO:0005524
Tpr3g4798 1617 SMART AAA_5 642 822 IPR003593 -
Tpr3g4798 1617 SMART AAA_5 1266 1445 IPR003593 -
Tpr3g4798 1617 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr3g4798 1617 Coils Coil 574 601 - -
Tpr3g4798 1617 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1203 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr3g4798 1617 Pfam ABC transporter 1257 1405 IPR003439 GO:0005524
Tpr3g4798 1617 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Tpr3g4798 1617 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 1495 - -
Tpr3g4798 1617 Gene3D - 613 847 IPR027417 -
Tpr3g4798 1617 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Tpr3g4798 1617 ProSitePatterns ABC transporters family signature. 1377 1391 IPR017871 GO:0005524
Tpr3g4798 1617 SUPERFAMILY ABC transporter transmembrane region 289 599 IPR036640 GO:0005524|GO:0016021
Tpr3g4798 1617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 838 IPR027417 -
Tpr3g4798 1617 SUPERFAMILY ABC transporter transmembrane region 919 1220 IPR036640 GO:0005524|GO:0016021
Tpr3g4798 1617 Gene3D - 1223 1476 IPR027417 -
Tpr3g4798 1617 CDD ABC_6TM_ABCC_D2 919 1215 IPR044726 GO:0140359
Tpr3g4798 1617 Gene3D ABC transporter type 1, transmembrane domain 881 1221 IPR036640 GO:0005524|GO:0016021
Tpr3g4798 1617 Gene3D ABC transporter type 1, transmembrane domain 282 600 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4798 Tpr-Chr3 52842791 52853108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4798 560 831 Calmodulin-binding Proteins AT2G36910 26.027 2.51e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4798 - K05665 mtr:MTR_3g011820 2991.83