Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4788 ATGGCTTCCGAATCCTCTAGCATCTCTGCCACTTCACAAGATCGAGGCGATTCTTCCAACTCAAAAAAAGTGGTGGTCACGAAGGAGATCGAACAAGATCAATCATCAAACTCAAATTCCAAAAACCCTGTCGATTTCGTGAAGCTATTGAAAGACGATTCGGTTCCTATGGCGAATGTGCAAGAGCATAATTTTTTTAGCCCTATTCAAGTCGGTTCGTCATCTCGTTTTCCTATTACCAACAATGAAGCGAAAGATGAGAATGAGAGTGAAGACAAAAATTCGGATTCAAGGTCTTTTTCATGCTCTTTTTGCAAAAGACAATTTTCTACTTCACAAGCGTTAGGAGGACACCAGAACGCTCATAAGGCAGAACGTGCCTTAGAAAAGCAACGGAAACAAAGGTATGATGGTGGTGCTTTAGGTTTAGGACAACCTCTTTTTAGCCCTTATTATAGTTATCCAAACACTCTTTTTACACCCCCTTATTATAATAGGGCACTTGGGACTAGAATGGAGTCCATGATTCAAAAACCATCTTATATTAATCCTAGGTTTACCCCACTTAGTATTGGGTATAGTCATGGTGCTTTGTGTTTGCAAGAGATATTAAGCCCTTCTCTTATGTCATTGAGAAATATGGGGGGTGGTAATAGTGGGATTGGAAATCTAAGCATTGGTGGTGCAACTACTTTAAAGATTGAAGATGGTTCCAAAAATAAATTAAAGATTGAAGATGGTTCAAAAAATAAAATTAGTGATATTCTAAAATTTGGAGAGTCTTCTACAAATATTGCTACAAGTTCAAACTCAAACTCAAACATAGAGAAGAAAAATAGTGTGGCTCTTACTTCAACTAAGGATGATATTCATCAATCAAAGTCCAACATTGAAGAAGAAACCTCCAATTCTGATGAATCATGTGGACTTGATTTGTCACTTAAGCTTTAA 951 0.3733 MASESSSISATSQDRGDSSNSKKVVVTKEIEQDQSSNSNSKNPVDFVKLLKDDSVPMANVQEHNFFSPIQVGSSSRFPITNNEAKDENESEDKNSDSRSFSCSFCKRQFSTSQALGGHQNAHKAERALEKQRKQRYDGGALGLGQPLFSPYYSYPNTLFTPPYYNRALGTRMESMIQKPSYINPRFTPLSIGYSHGALCLQEILSPSLMSLRNMGGGNSGIGNLSIGGATTLKIEDGSKNKLKIEDGSKNKISDILKFGESSTNIATSSNSNSNIEKKNSVALTSTKDDIHQSKSNIEEETSNSDESCGLDLSLKL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4788 316 MobiDBLite consensus disorder prediction 76 97 - -
Tpr3g4788 316 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 316 - -
Tpr3g4788 316 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g4788 316 SUPERFAMILY beta-beta-alpha zinc fingers 97 128 IPR036236 -
Tpr3g4788 316 MobiDBLite consensus disorder prediction 263 290 - -
Tpr3g4788 316 PANTHER ZINC FINGER PROTEIN JAGGED 3 316 IPR045320 GO:0003700
Tpr3g4788 316 MobiDBLite consensus disorder prediction 1 45 - -
Tpr3g4788 316 MobiDBLite consensus disorder prediction 263 316 - -
Tpr3g4788 316 Gene3D Classic Zinc Finger 81 139 - -
Tpr3g4788 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Tpr3g4788 316 MobiDBLite consensus disorder prediction 30 44 - -
Tpr3g4788 316 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Tpr3g4788 316 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4788 Tpr-Chr3 52781690 52782640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4788 95 183 C2H2 Transcription Factor Family AT5G10970 46.067 1.68e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4788 - - mtr:MTR_3g011970 364.385