Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4787 ATGAAGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGGATTAAGAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTTTCAAAAGCTCTGGAGTTATTTTTGCAAGACCTTTGTGACCGCACTTATGAAATAACTCTACAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGTGTACAAAGCTACAATGTCTTTGACTTTTTGAGAGACATCGTCAGCAGGGTTCCTGACTATAGCCACGGCCACGCTCACGCTCATGCTGAGCCTGGAGCTGATGATCGCGCCCTTCCAAAGAGAAGGAAATCTGGCGGTGATGATGGTAATGACAGTGATGACGAGGCCAAGCGGAGTAAGATGCATGAGTCAGGCCACACTGGCGGTACTGGCAGGGGAAGAGGAAGAGGCAGAGGAAGAGGCCGTGGTCGAGGGGCTCGAGCCGCAGAAAGAGAAGCCTTACATCAGCAGGTTGAACCCGAACCTTGCACCTCGATGCAACAAAGTAGTAAAGAAGTCTCTAATATGGCAGTAGATAATGGTCCAGAATCAAAGCAGTTATCAAAAGAAAATAATTCAGTTCATGAGGAAAGCACTCAATCTCTTCGAAACATTGATCTGAATGCAAGTATACATGAAAACGAGGACAAAAACAATACAAGCATGGCTACTCCTCAGGCCTCATTGCCTGAACCTTCTGCAATAACAGATATGCAACATGAAGAAATTCCCGGTTGGTCCCTTCCTGATGTAGACAAGATGGCGATCGACACATTGCAGCTTGCAGCAAACCTTGGTAATAGGATAGAAGAGGAGGAAGATTATGATGAGGAAGGGTAA 870 0.4552 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYSHGHAHAHAEPGADDRALPKRRKSGGDDGNDSDDEAKRSKMHESGHTGGTGRGRGRGRGRGRGRGARAAEREALHQQVEPEPCTSMQQSSKEVSNMAVDNGPESKQLSKENNSVHEESTQSLRNIDLNASIHENEDKNNTSMATPQASLPEPSAITDMQHEEIPGWSLPDVDKMAIDTLQLAANLGNRIEEEEDYDEEG* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4787 289 MobiDBLite consensus disorder prediction 170 214 - -
Tpr3g4787 289 MobiDBLite consensus disorder prediction 153 167 - -
Tpr3g4787 289 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 288 - -
Tpr3g4787 289 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Tpr3g4787 289 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Tpr3g4787 289 PANTHER HISTONE SUPERFAMILY PROTEIN 1 288 - -
Tpr3g4787 289 SUPERFAMILY Histone-fold 3 97 IPR009072 GO:0046982
Tpr3g4787 289 MobiDBLite consensus disorder prediction 94 139 - -
Tpr3g4787 289 MobiDBLite consensus disorder prediction 94 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4787 Tpr-Chr3 52775441 52779411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4787 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.379 1.56e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr3g4787 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4787 K21752 - gmx:100810093 371.318