Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4767 ATGTCCACAGCTCAGCCACCATTTTCCACCACTCTCACCACCACCGGTGTAGGTCTCGGCTACGGCATCGCAATAGCCGTAAGCATCCTTGTTCTAATCTCCACCATCATGCTAGCTTCTTACCTTTGCGTCCGTATAAAATCACACGGCCGTCGCGATTCTTTCCATCTCGAAATCATTCATCAAAATCAAAATCAAAATAATACTAATAACTCCGTGCAGCTCAGTCCAATTATCTTAGGCTTAGAAAAGCCCATGATTGAAGCCTACCCAAAGATGATACTTGGAGAGAGCAGAAGATTACCTAAGCCCAATGAAAGCCTATGTGCTATTTGCTTGACAGAATATCTTCCAAAGGAAACAATACGGTGTGTTCCTGATTGTCAACATTGTTTTCATGCGGAGTGTGTTGATGAGTGGCTTAAGATGAGTGCCACGTGTCCTTTGTGTCGGAATTCTCCTGCTGTTTCGCCGGTGACTACTCCGGTGGTTTCTCCGTTGTCGGAGCTTGTTCCTCTGGCTTTTCATGCCAGGTGA 537 0.4581 MSTAQPPFSTTLTTTGVGLGYGIAIAVSILVLISTIMLASYLCVRIKSHGRRDSFHLEIIHQNQNQNNTNNSVQLSPIILGLEKPMIEAYPKMILGESRRLPKPNESLCAICLTEYLPKETIRCVPDCQHCFHAECVDEWLKMSATCPLCRNSPAVSPVTTPVVSPLSELVPLAFHAR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4767 178 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 20 157 - -
Tpr3g4767 178 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Tpr3g4767 178 SMART ring_2 109 150 IPR001841 -
Tpr3g4767 178 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 157 - -
Tpr3g4767 178 Pfam Ring finger domain 109 151 IPR001841 -
Tpr3g4767 178 SUPERFAMILY RING/U-box 101 156 - -
Tpr3g4767 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4767 Tpr-Chr3 52623639 52624385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4767 1 178 C3H Transcription Factor Family AT5G07040 54.494 6.65e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4767 - - lja:Lj3g3v0787250.1 246.128