Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4751 ATGGGTCGCGGAAGAATATCAATGGAACTCATTCAAAGGGAAAAATCAAGAAAGATAACATTTCAAAAGAGAAAGAGTGGATTACTAAAAAAAGTGAATGAATTTGCCATTCTTTGTGATGTTGATGTTTGTGTAATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATATGCTGAACCTGAAACATGGCCTAAAGAAAAAAGAGACGTACAAAAAATTCTTCAAAAGTACTACAACACAACAATGGATCGGCGTCATAAGATCTATGATGTTCAAGAGTATTTCAAAGAAAGGATGAAAAAAGTCGAATTTGACATTTCCAAAGTGCGCAAAGAGATGTTAAAGATTATGTATCCAACTTGGGATGAATCTTTCGACACTCTTAGAGAGGAACAAATGAGGTCATTTGCTAGCATATTGGATGCTAAGCTTGAGGCTTGTAATCAAAAGATGAATATGCTCAAAGGAGATGTTAAAGGAAAAACAATAGCTCATGAATCATACAAGGTTGATAAACCTAATACTTCCTATTTGACATCAACTCCAAATAGCTACATCAATCTCATGCAAAACAACATGTCTCAAGCACAAATTTACCCTCCAATGATGAATATTGGTGACAAAAACCCCTTAGGGTTTTGGCCACTTCAATTGGGACAAAGCTCTCAACCTTCTTCTTCGACACTTTCGAGTGCACAAGGTTCCTACCAAGTGGAGTCTGATGAGGGTAGATATACACAATCTTACCCCGGCAAGCAAGTCGATAATAATTGGGCTAAATGGGTCAGTCATGTTGATCCTAATATTTTCTTGGATCCGAAAACCGATACGCAAAAGAAGGATGAAGCTGAAAATGGTGAAAATTTATCACCATACTCTAATATTTACAATGGAAATCCAATGACAATGCAATCATATCCTATTGGTATGCATACTCTTCCTTTCCAAAATCTTCCAAACCTACCACCACAAGGATATCAACTTAATGGATTCTATGATATGGATATGCTTCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1053 0.3656 MGRGRISMELIQREKSRKITFQKRKSGLLKKVNEFAILCDVDVCVILYAPNFEGQGYAEPETWPKEKRDVQKILQKYYNTTMDRRHKIYDVQEYFKERMKKVEFDISKVRKEMLKIMYPTWDESFDTLREEQMRSFASILDAKLEACNQKMNMLKGDVKGKTIAHESYKVDKPNTSYLTSTPNSYINLMQNNMSQAQIYPPMMNIGDKNPLGFWPLQLGQSSQPSSSTLSSAQGSYQVESDEGRYTQSYPGKQVDNNWAKWVSHVDPNIFLDPKTDTQKKDEAENGENLSPYSNIYNGNPMTMQSYPIGMHTLPFQNLPNLPPQGYQLNGFYDMDMLQAHMFNNYMDGRK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4751 350 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Tpr3g4751 350 PANTHER MADS BOX PROTEIN 3 227 - -
Tpr3g4751 350 SUPERFAMILY SRF-like 2 100 IPR036879 GO:0003677|GO:0046983
Tpr3g4751 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g4751 350 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 227 - -
Tpr3g4751 350 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g4751 350 MobiDBLite consensus disorder prediction 222 244 - -
Tpr3g4751 350 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr3g4751 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Tpr3g4751 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g4751 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g4751 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4751 Tpr-Chr3 52460645 52461697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4751 1 216 Type I MADS-box Gene Family AT5G55690 32.420 1.43e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4751 SRF-TF 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4751 - - mtr:MTR_1g114730 441.81