Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4746 ATGAAGAAAACTTTTTCCACAAACAGCGCCACCCGGCGCGACTCATATTACCACCGCCAACCACCGTCTCCCATCTTTCATCACCGGAACCCCGGATTCCACTCCAACAACCGCCATCTCCCTAATCATCCCCGCCTCCCCACTTTCACCATCAACCTCCGCTTCAACCACCGTACTCACCGCCGTGACCTCCGCCGCGACGACCTCGAATCTCTGATAAAAAAATGCAATCCAAATCCCGACAATTTCACATTCAACATCAACGACAGAATCGCCGCTTCTCTCAATTTCAATCAGAAAACTGACGCGATCAACGCCGTTATTTGGTTCTGGCAATCACGCCTCTCAGTGAATTCAAACCGAATTCACGATTTCACGCCGGAGTTCATAACGAACTCCAACAACGACAATGTTGAACTCGATGTTCGTCTTCGAAACGTGTTCGCGAGCCACGTGAAGGAATTAATGAATGGAAATGAAGTGAATAGATGGATTTCTGAATGGGATCGATTATTGAAAGAGATTAATCATGTTAATAGCTTATTAAGTAAATCTTTTCAAATTAGGGTTCAAGAACAGAATATTGAAACAAAAAAAGTACTTGATGGTGAAAAGAGTTTGATTGAAAGAAGATTAAAGGAATTTGAATCTGCTATGGAGTGTATTTTGAAGTATTTAGAAGAGAAGAATAATGATGATTATTATTATGATTATGAAATTGTTAATGTGTTTAGGTTTGGTGAAAATTTTGATTGGGAGAAGATTTATAATTTAATTGTGAGGGAACGTTGTAGACTTGAAGAAGGTTTGCCTATTTATGCTTATAGGAGGGAAATTCTTCAGCAAATACATCATCAACAGATAACAGTGTTGATTGGAGAGACAGGTTCTGGGAAGAGTACTCAGATAGTGCAGTTTCTCGCTGATTCAGGCGTTGGGGCCGATGAGTCAATTGTGTGCACTCAGCCTCGCAAGATTGCTGCGAAATCATTGGCTGAAAGGGTCCAGGAAGAATGTGGTGGATGTTATGAAGATAATTCAATCAAGTGTTATTCTACATTTTCATCTTGGAACAAATTTGATTCCAGGATAACCTTCATGACAGATCACTGTTTATTGCAACACTACATGAGTGATAAAAATTTGTCTGGGATCTCGTGTATTATAGTGGATGAGGCGCATGAAAGGAGTATAAATACTGATTTACTGCTGGCGTTGATAAAGAATTTACTTTGTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCTACGGCTGATGCAAAGCAACTATCTGATTACTTCTATGGTTGTGGAATTTTTCGTGTCCTTGGGAGAAACTTCCCTGTGGAGCTGAGGTATGTTCCTTTTGACTATGGAGAACGTTCTGGTTCTGCTGTTGTGGACTCGTATGTTTCCGATGTTGTCAAAATGGCAACTGAAATTCACGTAGCAGAGAAAGAAGGAACTATTCTTGCCTTTCTTACCTCACAGTTAGATGTAGAATGGGCCTGTGAAAAGTTTGAAGCCCGCTCTGCAGTTGCTTTGCCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCGGGACTATCCTGGGAAAAGAAAAGTGATATTTTCAACGAATGTCGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGCTTCGATCCTTGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAACGCACTGGTCGTGCTGGGAGGACCGAGCCTGGTAGGTGCTATAGGCTGTACTCAGAAGCTGATTATCAATCTATGGAACTAAATCAAGATCCTGAAATCCGAAGAGTCCATCTCGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTCGATTTTGTGGATGCTCCAAGCCATAGCTCTATTGAGAGGGCAATTAGGAATCTAATTCAATTAGGAGCCATTAAACTGAACAATAATGTTCATGAATTAACTTCTGAAGGAAGGTGCTTGGCAAGAATGGAGATTGAACCTAGGCTTGGTAAACTCATTCTTGGCTGTTTCCAACATGCTTTGGGTAGGGAAGGCATTGCCCTTGCTGTCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATTGCGATGGTGACCTTTTTACTCTTCTGTCTGTGTACAAGGAATGGGAAGCTCTGCCTCAAGATATGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAAACACATTTTTGGAGTTAGAATCTTGCCTAGAGAGTGAACTTGGCTTTGTTGTTCCAAGCTACTGGCGCTGGGACCCTCACATCCCTTCTATTCATGATAAGAATATGAAAATGGCTATACTGTCCTCACTAACTGAAAATGTAGCCATGTACTCTGGACGCAATCAACTTGGTTATGAAGTAGCTCAAACTGGGAAACTTGTTCAACTACATCCATCATGTTCCTTGCTCATATTTGCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTCCGTTCAGAGACTAATGAATATTTGTTCTGTGTGAGTGCTGTTGACTTTCAATCATTATACAGCCTGAAAACTCCTCCCTTGTTTGATGTATCCAAGATGGACGAGCGGAAGTTGCAAATGAGGACGTTGTCTGGGTTTGGCAAACATGTGCTCAAGAGATTTTGTGGAAAAGGAAATTTGCTCGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAACGAATCTTTGTTGAAGTGAATTTTGACGAGAACCACGTTCAGTTGTATGCCAGTTCACATGATGTGGATACAGCTAGTAAGTTGGTGAATGATGTTTTAAAATATCAGAAAAAGAGGTTATACAATGAATGTATGGAAAAATGTTTGTATCATGGGTCTGGTTCCTCTTCACCTGTGGCTTTGTTTGGCTCTGGTGCGGAGATAAAGCATTTGGAACTTGAGAAGCATTCCTTGAGTGTTGATGTGTTTCACCCAAATGTAAATACAATTGATGAAATGGAGCTCCTGATGTTTTTTGAGAAAAATACTTCTGGTTGTATATGTGACCTGCACAAGTTCACAGGCATGGTGAAGGATGTTGAGGATAAAGAAAAATGGGGAAGGATAACGTTTCTGACCCCCAATGCTGCCAAAAAAGCTGCTGCGCTGGATGGAGAAGAATTTTGTAGCTCGCCCTTGAAAATAGTTCCTTCACAATCAGCTATGGGAGGGGATAAAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCCTCGTAGGCCTACCAAAGCAGTTGGCATGATTATATGTGATAAAAATGATGTCAATTTCATCTTGAGAGATTTTCATAACCTTATAATAGATGATAGATATATTCGTTGTGCACCCAACGATAAATGTATGGACAGAATTATGATAAGTGGGCTTGACAAAGAGCTTCCCGAGACTGAAATTTTGGATGTACTAAGATCTGCTACAAGTAGAAGGATTCTAGATTTTTTCTTTTTGAGGGGAGATGCTGTTGTAAATCCACCATGCAGTGTCATTGAAGAGGCACTCTTGAAAGAAATTTTACCCTTAATGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCCACCTAAGCCGAAGGATTATTTGATGAATGCTTTAATTCATTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGAACATTGATGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTCCCAGCAGTTGTTTCACAGCACCTTGATATTTTCTTCTCCAGTGTATCATGTGATTAAAGAACAACTGGAAAAAGTACTGGCAAGTTTCAAAAAATTAAAAGGTCTTGAGTGGAACCTAGACAGGACACCTAATGGTTCCCACCGAGTGAAGATAACAGCCAATGCCACAAAGACGGTGGCAGAAGGTAGGAGACCTCTGGAAGAACTGTGGAGAGGGAAAACCATTGTCCACGACAACCTCACCCCTTCGGTTCTACAGCTCATGTTGTCCAAAGATGGTTATAGTCGTATAAGCTCAATACAGCAGGCGACAGCAACTTACATTCAATTTGACAGGCGCAACCTGAATATACGGATATTTGGTTCTCCTGACAAAATTGCTTTGGCTGAGCAGAAGATAATTCAATCTCTCTTGTCCCTCCATGAAGAAAAGCAGTCAGTAATCCATCTGAGAGGGAGGGACCTACCTTCTGATTTCATGAAGCGAGTGGTTAGGAATTTCGGGCCAGATCTTCACGGACTAAAAGAGAAGGTACCTGGGGCAGATCTTAAGCTCAACACACGTGACCAGACAATCCTTCTTCATGGTAACAAGGAGTTCAAATCACTAGTGGAGGAAATAACTTTCGATATTGCACATTTAAGTCCTCATTTAATTGAGAGACTTAACACTGGGCCTAGTTGTCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTATGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATATGTTGTGCTCATCAGGGCTGTGGAGATATTATTTTGCTAGCAGATTTCAGAACTCTCCTATCAAATGATAAGTTGGAGGAACTTTTCAGGGCATCATTGGGAGCTTTTGTAGCATCAAGTTCGGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATCTATCGAGTTGCAGATCCCAACACTGCTAGTGTGCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCGTATGTTTCCTGTGAGAGATATCGAGACTTAAAGCATGACCCAGATTCATCATCTCTGAGAGATTGGTGCAAAGGGAAAGAACACGTCAAGTGGTGCTCGGCATGTGGCCATGTAATTGAGAAGGTAGACGGGTGCAATCACATTGAGTGCAAGTGTGGAAAACACATATGTTGGGTTTGCTTGGAGTTCTTTACAAGCAGTGCTGAATGTTACGAGCACATGGACATACACGAATATACTGTGGAAGAGGTTTAA 5214 0.4164 MKKTFSTNSATRRDSYYHRQPPSPIFHHRNPGFHSNNRHLPNHPRLPTFTINLRFNHRTHRRDLRRDDLESLIKKCNPNPDNFTFNINDRIAASLNFNQKTDAINAVIWFWQSRLSVNSNRIHDFTPEFITNSNNDNVELDVRLRNVFASHVKELMNGNEVNRWISEWDRLLKEINHVNSLLSKSFQIRVQEQNIETKKVLDGEKSLIERRLKEFESAMECILKYLEEKNNDDYYYDYEIVNVFRFGENFDWEKIYNLIVRERCRLEEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQFLADSGVGADESIVCTQPRKIAAKSLAERVQEECGGCYEDNSIKCYSTFSSWNKFDSRITFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYGCGIFRVLGRNFPVELRYVPFDYGERSGSAVVDSYVSDVVKMATEIHVAEKEGTILAFLTSQLDVEWACEKFEARSAVALPLHGKLSSEEQFHVFRDYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPCSGMNVLKVCWISQSSANQRTGRAGRTEPGRCYRLYSEADYQSMELNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSHSSIERAIRNLIQLGAIKLNNNVHELTSEGRCLARMEIEPRLGKLILGCFQHALGREGIALAVMMANARSVFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQDMKNKWCWENSINAKSMRRCQNTFLELESCLESELGFVVPSYWRWDPHIPSIHDKNMKMAILSSLTENVAMYSGRNQLGYEVAQTGKLVQLHPSCSLLIFAQRPSWVVFYELRSETNEYLFCVSAVDFQSLYSLKTPPLFDVSKMDERKLQMRTLSGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVEVNFDENHVQLYASSHDVDTASKLVNDVLKYQKKRLYNECMEKCLYHGSGSSSPVALFGSGAEIKHLELEKHSLSVDVFHPNVNTIDEMELLMFFEKNTSGCICDLHKFTGMVKDVEDKEKWGRITFLTPNAAKKAAALDGEEFCSSPLKIVPSQSAMGGDKTFSFPAVEARISWPRRPTKAVGMIICDKNDVNFILRDFHNLIIDDRYIRCAPNDKCMDRIMISGLDKELPETEILDVLRSATSRRILDFFFLRGDAVVNPPCSVIEEALLKEILPLMPKRNPHISSCRVQVFPPKPKDYLMNALIHFDGRLHLEAAKALENIDGKVLPGCLSWQKIKSQQLFHSTLIFSSPVYHVIKEQLEKVLASFKKLKGLEWNLDRTPNGSHRVKITANATKTVAEGRRPLEELWRGKTIVHDNLTPSVLQLMLSKDGYSRISSIQQATATYIQFDRRNLNIRIFGSPDKIALAEQKIIQSLLSLHEEKQSVIHLRGRDLPSDFMKRVVRNFGPDLHGLKEKVPGADLKLNTRDQTILLHGNKEFKSLVEEITFDIAHLSPHLIERLNTGPSCPICLCEVEDGYQLEGCGHLFCRLCMVEQCESAIKNQGSFPICCAHQGCGDIILLADFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPNTASVPFVCGACYSETCTRCHLEYHPYVSCERYRDLKHDPDSSSLRDWCKGKEHVKWCSACGHVIEKVDGCNHIECKCGKHICWVCLEFFTSSAECYEHMDIHEYTVEEV* 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4746 1737 ProSiteProfiles TRIAD supradomain profile. 1521 1736 IPR044066 -
Tpr3g4746 1737 SMART ultradead3 268 453 IPR014001 -
Tpr3g4746 1737 Gene3D - 447 619 IPR027417 -
Tpr3g4746 1737 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 825 899 IPR011709 -
Tpr3g4746 1737 SMART ibrneu5 1592 1657 IPR002867 -
Tpr3g4746 1737 SMART ibrneu5 1658 1723 IPR002867 -
Tpr3g4746 1737 SUPERFAMILY RING/U-box 1607 1662 - -
Tpr3g4746 1737 SMART ha2_5 660 756 IPR007502 GO:0004386
Tpr3g4746 1737 Gene3D - 644 748 - -
Tpr3g4746 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 778 IPR027417 -
Tpr3g4746 1737 Pfam Helicase associated domain (HA2) 661 755 IPR007502 GO:0004386
Tpr3g4746 1737 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 386 395 IPR002464 -
Tpr3g4746 1737 CDD DEXHc_RHA-like 287 443 - -
Tpr3g4746 1737 PANTHER ATP-DEPENDENT RNA HELICASE 92 1486 - -
Tpr3g4746 1737 PANTHER ATP-DEPENDENT RNA HELICASE 1556 1649 - -
Tpr3g4746 1737 SMART helicmild6 502 600 IPR001650 -
Tpr3g4746 1737 CDD SF2_C_RHA 448 608 - -
Tpr3g4746 1737 ProSitePatterns Zinc finger RING-type signature. 1541 1550 IPR017907 -
Tpr3g4746 1737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 640 IPR001650 -
Tpr3g4746 1737 Pfam IBR domain, a half RING-finger domain 1601 1657 IPR002867 -
Tpr3g4746 1737 Pfam Helicase conserved C-terminal domain 483 599 IPR001650 -
Tpr3g4746 1737 Pfam DEAD/DEAH box helicase 276 431 IPR011545 GO:0003676|GO:0005524
Tpr3g4746 1737 CDD KH-I 1392 1430 - -
Tpr3g4746 1737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1521 1601 IPR013083 -
Tpr3g4746 1737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 444 IPR014001 -
Tpr3g4746 1737 ProSitePatterns Zinc finger C2H2 type domain signature. 1710 1730 IPR013087 -
Tpr3g4746 1737 SUPERFAMILY RING/U-box 1679 1730 - -
Tpr3g4746 1737 SUPERFAMILY RING/U-box 1524 1597 - -
Tpr3g4746 1737 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1556 1649 - -
Tpr3g4746 1737 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 92 1486 - -
Tpr3g4746 1737 Gene3D - 258 446 IPR027417 -
Tpr3g4746 1737 ProSiteProfiles Zinc finger RING-type profile. 1525 1567 IPR001841 -
Tpr3g4746 1737 Gene3D - 1653 1736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4746 Tpr-Chr3 52426202 52435356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4746 1541 1713 ARIADNE family AT3G27710 30.857 5.03e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4746 K12818 - gmx:100810008 2480.67