Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4742 ATGGAAGAAACTTTGCAAAGTGATGAAATACCGAAATTCAGAGATATCAGACGCTATTACTGCCAATACTGTGGTATCTGTAGATCCAAAAAAACCCTAATTACCTCACATGTCAATTCAGAACACAAGGAGGAGGTGGAGAAGGCAAGAGTTGAATCTGAACCTGATGCAGAGGGTGCTTTGAAATCTAATACTTGTGAAGAATGTGGTGCTAGTTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGTCATTCACTTGAGAGACCATTTGTATGTAGCCTTGAAGATTGTAAGGTGAGTTACAGAAGAAAGGATCATCTAAATCGCCACCTTCTACAGCATCAAGGGAAAACTTTTCAATGTCCTATTGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATTTGAAAAGACATGTTGAAGAGATTCATGATGAAAATTCGACCCCTATTAGAAGTGACGAAAATCAGAAGCAGTTTGTTTGTCCTGAAATTGGTTGTGGAAAGGTTTTCAGATATGCATCACAGCTACGGAAACATGAAGATTCTCATGTTAAGCTCGATACGGTTGAAGTGGTGTGCTTAGAGCCTGGTTGCATGAAAGTTTTCACCAATGCAGAGTGCCTTAGAGCTCATGTTAAGTCTTGCCATCAATATGTGACCTGCGACACTTGTGGGACTAAGCAACTAAAGAAGAACATGAAGAGGCATCTCCGCACACACGAAACCAGCACTTCATTAGAACCCTTTAAATGTGAATTTAAGGGTTGTGACCGCACATTCTCAACTAAATCAAATCTTCATACGCATCAGAAAGCAGTGCACTTTCAAGTAAAGCCGTTTGTGTGTGGCTTTCCTAACTGTGGAATGAGGTTTGCTTACAAACACGTGAGAGATAATCATGAGAAGACTGCTAAACATGTTTTTACCCTTGGTGATTTTGAAGAAACTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGGTGAAGAGAAAATGTCCTACGGTAGAAATGTTGGTTAGGAAGAGAGTTACTCCACCTAGTCAATTGGAGAACTTGTTATTTATGCAGCACTGTTAG 1086 0.4006 MEETLQSDEIPKFRDIRRYYCQYCGICRSKKTLITSHVNSEHKEEVEKARVESEPDAEGALKSNTCEECGASFKKHAYLLQHMQSHSLERPFVCSLEDCKVSYRRKDHLNRHLLQHQGKTFQCPIENCKSGFSLQSNLKRHVEEIHDENSTPIRSDENQKQFVCPEIGCGKVFRYASQLRKHEDSHVKLDTVEVVCLEPGCMKVFTNAECLRAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHETSTSLEPFKCEFKGCDRTFSTKSNLHTHQKAVHFQVKPFVCGFPNCGMRFAYKHVRDNHEKTAKHVFTLGDFEETDEQFRSRPRGGVKRKCPTVEMLVRKRVTPPSQLENLLFMQHC* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4742 361 Gene3D Classic Zinc Finger 220 310 - -
Tpr3g4742 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Tpr3g4742 361 SUPERFAMILY beta-beta-alpha zinc fingers 63 116 IPR036236 -
Tpr3g4742 361 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Tpr3g4742 361 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Tpr3g4742 361 Pfam Zinc finger, C2H2 type 252 277 IPR013087 -
Tpr3g4742 361 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Tpr3g4742 361 Gene3D Classic Zinc Finger 148 219 - -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Tpr3g4742 361 SUPERFAMILY beta-beta-alpha zinc fingers 233 291 IPR036236 -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Tpr3g4742 361 PANTHER - 12 351 - -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Tpr3g4742 361 Gene3D Classic Zinc Finger 9 91 - -
Tpr3g4742 361 Gene3D Classic Zinc Finger 119 147 - -
Tpr3g4742 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Tpr3g4742 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
Tpr3g4742 361 SUPERFAMILY beta-beta-alpha zinc fingers 153 187 IPR036236 -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Tpr3g4742 361 Gene3D Classic Zinc Finger 92 118 - -
Tpr3g4742 361 SMART c2h2final6 92 116 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 64 86 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 162 186 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 19 42 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 252 277 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 194 219 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 283 309 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 121 146 IPR013087 -
Tpr3g4742 361 SMART c2h2final6 222 243 IPR013087 -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Tpr3g4742 361 PANTHER ZINC FINGER PROTEIN 12 351 - -
Tpr3g4742 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Tpr3g4742 361 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Tpr3g4742 361 SUPERFAMILY beta-beta-alpha zinc fingers 102 147 IPR036236 -
Tpr3g4742 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4742 Tpr-Chr3 52388652 52391269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4742 88 312 C2H2 Transcription Factor Family AT1G72050 50.725 9.36e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g4742 zf-C2H2 0.00023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4742 K09191 - gmx:100801812 596.275