Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4735 ATGAGTATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCATCCCCTTCCCTTCACCATCATCAACATCAACAACAAAATCAAAACCAACCCATTTCACATGATCACAATTCAAACCACTCTTTACCTTCATCAGCTTCATTAAGTGTTGGTTTTGGCATTTTTCCACTCCTAACAGCCACACCCTGCATGCCACAACAACAACCTCAAAACAATGATGTTCAAGAAAATCATAACCAAAACAACAATTTTTGGAACCTTAGGATGTGTCCTGAAGCAATGAACCTACCAAAAAAAGGAGTTATCAATGTTGATGATGAGAATCAAAACCATAACAACAATAGTAACAACAAGATGGTTTTGATGGAGAGTGAAGAAAATGGTGTTTATGGTTCTGAGTATAGAGTTTGTCATGATTGTGGTAATAGAGCTAAGAAAGATTGTGTTTTTAGAAGATGTAGGACTTGCTGTAAGGGAAGAGGTTATGATTGTAATACTCATTTGAAGAGTACTTGGATTCCTTCGACTCGTCGCCGGGAACGCGATGTGGAGATGGTTGATGGTGATGGTGAGGGTTGTTCTGGTGTTAAGAGAGCAAAAACTTTATTAGGGTCATCACAAAATGCTACTGCTACTTCTCATAGTTCAAACTCTAATGGCACTACTCCAAAAAGTTTTGCTACTAGCTCTTGTCATCAAGATGCTAGTTTCAAAGAGGCATTACCAGGTCATGTCAATGCACCAGCTGTATTCAGATGCCATAGAGTAACTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTAGCAACAGTTCATATTTGTGGCCATGTTTTCAAAGGGTTTCTCTATGATCATGGTTTTGATGGAAAAAATCCAATGCCTTGTGTTTCAGAACTGCAATTAGGAAGTGGAAAGAATGGTGAATGTTCTTCTGCACTTGGTGTTACAACAAATAATGCTTACCCTGCTTCTGCTAGTTAG 984 0.3882 MSMLGLRDLVLIAPSPSLHHHQHQQQNQNQPISHDHNSNHSLPSSASLSVGFGIFPLLTATPCMPQQQPQNNDVQENHNQNNNFWNLRMCPEAMNLPKKGVINVDDENQNHNNNSNNKMVLMESEENGVYGSEYRVCHDCGNRAKKDCVFRRCRTCCKGRGYDCNTHLKSTWIPSTRRRERDVEMVDGDGEGCSGVKRAKTLLGSSQNATATSHSSNSNGTTPKSFATSSCHQDASFKEALPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHICGHVFKGFLYDHGFDGKNPMPCVSELQLGSGKNGECSSALGVTTNNAYPASAS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4735 327 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Tpr3g4735 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 326 IPR007818 GO:0003700|GO:0006355
Tpr3g4735 327 MobiDBLite consensus disorder prediction 204 223 - -
Tpr3g4735 327 Pfam Domain of unknown function (DUF702) 135 289 - -
Tpr3g4735 327 MobiDBLite consensus disorder prediction 17 42 - -
Tpr3g4735 327 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 326 - -
Tpr3g4735 327 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 241 287 IPR006511 -
Tpr3g4735 327 MobiDBLite consensus disorder prediction 18 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4735 Tpr-Chr3 52277047 52281289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4735 1 307 C2H2 Transcription Factor Family AT5G12330 42.006 1.76e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr3g4735 DUF702 5.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4735 - - gmx:100806835 414.461