LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4693	ATGGAGCAACAACGAGCAATGTTTCCTTCTTCCAAGAGAGTTTGTACTTATGATGTTTTCCTCAGTTTCAGAGGAGAGGATACTCGCTATGGTTTCACTGGAAATCTCTACCATGCTTTACACCAAAAAAGAATCAAAACTTTCATCGATGATGAAATGATATTGAGAGGAGAACAAATTTCACCAACTATTTTCAAAGCAATTGATGAGTCTAGAATGGCCATAATTGTTTTCTCCAAAAACTATGCATCCTCAAAATGGTGTCTTCAAGAACTTGCCAAAATCATTGGATGTTTCAAAGACAAGGAACTAGTGGTGTTTCCAGTGTTTTACAACGTTGATCCATCGGAGGTTCGAAATCAGACGGGGAGTTATGGACAACAATTGGCTAAGCATGAGGAGAAAATGAAGGAAGAAGTGCAAGGTTGGAGGTTCGCTTTACGTGAAGCTGCCAATCTGGCAGGGTGGTGTTTTATAGATGGATGCGAATATGAATATGAATTTATCAAAAGGATTACTGATACGGTGTGCAGCACATCAAAACAGATCCTTTCACATGTTGATGATTATGCAGTTGGACTTGAGTCACGCGTATTTAAAATACTAAACCGTTTGCAAATGCCTGATCCTAAGGTCATCGTGATAGGAATTTGTGGTGTTGGTGGAATAGGCAAAACTACTTTGGCACGAGCTGTGTATGATTCCATTGGCCAACAATTTGAAGGTCTGTGTTTTCTCAATGATGTCAAAGAAAATTCAACCAAATATGGATTGGCGTATCTACAACAGGTAATTCTTTCTGATACGGTTGGCGAGAATATCAAGCTGCGTAATGAGAATGAAGGAATTTCCATCTTAATCAGAAATTTGCAAAGTAAAAGAATTCTTTTGATACTTGATGGTGTTGACAAGTTGGACCAATTGAAGAATTTAGCGGGAGAACCCAGTTGGTTTGGTTGGGGGAGTAGAATTATCATAACTACTAGGCAGAAAGATATTCTAACTTCTCATGGAGTTGGAAATATATATGATGTACCTAGTTTGGATTATTATGAATCTCTTCAACTTTTAAGTTCCATTGCATCAAAAAGACTTAACCATAAAGGAGTCTGGGAACGTGTAATCAGCTATTCCCACGGCATTCCGTTGGTTTTAAAGGTTATCGGTTCTGATTTGTTAGAAAACTCAACTGATGAAGGGGAGATTTCATTAGACAGATATGAAAAAGTCTGCAATGAAGAAACTCAGAGTATACTTGAAGTGAGTTATAATAGTTTGAATGAACACGAGAAGAGAATTTTCATTGACATCGCATGTTTCTTCACTGGAGAGCCATTTTCATATGTCAAAGAAATACTATCTGCTTGTGGTTTCTATACAAAATATGGTATTGACAGACTAAAGGATAGATCCCTCATATCAATCACTCCCAGTGGAAGTTTGATGGTGCATGATCATATAATAGACATGGCTATGAATATAGTACAACAAGAATCACCGATGAATCCTTGCAAACGAAGCAGGTTATGGTTACCTGAAGATGTTCTTCAAGTTTTTGATGAAAATGCGGGAAATGGTAACATCGAAGTCATGATATTGGACAACTTACCGCAAGAAAATGTAGAGAAATTGAGTGACAAAGCCTTCAAAGATATGAAAAGCCTGAGAATACTAATTATTAAGGACGCGATATATTCAGAAGTCCTCCAACATCTTCCTAATAGCTTAAGAGTTCTGGATTGGAGTGGATATCCTTCATGTTGTTTACCACCCGATTTTGTCAACCTACCTTCTAATTGTCTCATTTTCAACAAGTTCAAGGATATGAAGTCTTTGATTAGTATTGATTTCACCGACTGTATGTTTATAAGAGAAGTACCTGATATGTCTGGTGTCCCAAACTTGAGGACATTGTATCTTGATAATTGTATTAATGTTACTAAAATTCATGATTCTGTTGGATTCATTGATAAACTTCAAGAGCTGACAGCCACGGGATGCGTTAATCTAACAACAATCCCCGTCGCATTCAATTTGCCATCTCTTAGAGTTCTCTCTTTCTCCGAGTGCTCAAAACTCGCAAGGTTCCCAGAAATATTGTGCAAGATCGAAAATTTGCGACATGTCAACTTGTGGCAAACTGCCATAGAGGAATTACCAATTTCAATTGGAAATGTGACGGGACTCGAAGTTTTAACTCTGATGGATTGTACTAGGCTTGATAAGCTACCTGGTAGCATTTTTACACTACCAAGACTTCAAGAAATTCAAGCTGACTCATGTAAAGGGTTCGGCATTTCTATTGAATGTGAAGATAATAATGGACCGCTGAAATTCACTGTTTCTCCAAACAAGATTCATCTGTATTTGAGCTCTTGCAAATTAACAGATGAACATCTTTTTATATGTCTCAGTGGTTTCTCCAACATGGTACATTTGGACATATCTTGCAGTAATTTCACTGTCCTTCCACCATGCATTAAAGAATGTATCCACTTGAACACTCTTCTGTTGACAAACTGCAATCAGCTTCATGAAATCTCAGTAATTTCACCAAAATTGAGAGAAATAGATGCATTGAACTGCACATCATTGACATCCCAGTCACAAAGTGTACTATTAAGCCAGGAATTTCATGAAACCGGGGAAAAAACTGTAATGCTTCCAGGATCAAGTATACCAGAATGGTTTGATCATTGTAGCAGTGAAAGATCGATATCCTTTTATGCTCGCAAGAGATTCCCTAGTATTTGTGTGTCTGTTGTTTTTGGAGTGTTGGAAAACTTGCCTCATCATTTTCTAGTTAGATTCTGTTTAATCATCAACGGCCACAAAACGATACTATCACCATGTTCTAGTTTGTCAATTGTGAAGGAACATGTGTGGCTGTTTGATCTAAGAGCATTTATCAAAAATCACAACCTTAGAATTTATTTCAAGCAACATGGTTGGAATCATGTGGAAGTTTCATGTGAGGATTGTGAAGATGAGCATTTTATGGCACAAGCTGTTCATGGACTTAGAAGAATGACAATTGTGAAATGGTATGGAATTCATGTGTACAGACAAGAAACCAGAATGGAGAATATCTTATTCACAAGTGCCAAGACTCTACAAGAAAAGAATACTAATTTTGAAAGATTTAATGAAGATAATTACCCTTTGTCTAAAAGGCAGTGTAAATGA	3186	0.3713	MEQQRAMFPSSKRVCTYDVFLSFRGEDTRYGFTGNLYHALHQKRIKTFIDDEMILRGEQISPTIFKAIDESRMAIIVFSKNYASSKWCLQELAKIIGCFKDKELVVFPVFYNVDPSEVRNQTGSYGQQLAKHEEKMKEEVQGWRFALREAANLAGWCFIDGCEYEYEFIKRITDTVCSTSKQILSHVDDYAVGLESRVFKILNRLQMPDPKVIVIGICGVGGIGKTTLARAVYDSIGQQFEGLCFLNDVKENSTKYGLAYLQQVILSDTVGENIKLRNENEGISILIRNLQSKRILLILDGVDKLDQLKNLAGEPSWFGWGSRIIITTRQKDILTSHGVGNIYDVPSLDYYESLQLLSSIASKRLNHKGVWERVISYSHGIPLVLKVIGSDLLENSTDEGEISLDRYEKVCNEETQSILEVSYNSLNEHEKRIFIDIACFFTGEPFSYVKEILSACGFYTKYGIDRLKDRSLISITPSGSLMVHDHIIDMAMNIVQQESPMNPCKRSRLWLPEDVLQVFDENAGNGNIEVMILDNLPQENVEKLSDKAFKDMKSLRILIIKDAIYSEVLQHLPNSLRVLDWSGYPSCCLPPDFVNLPSNCLIFNKFKDMKSLISIDFTDCMFIREVPDMSGVPNLRTLYLDNCINVTKIHDSVGFIDKLQELTATGCVNLTTIPVAFNLPSLRVLSFSECSKLARFPEILCKIENLRHVNLWQTAIEELPISIGNVTGLEVLTLMDCTRLDKLPGSIFTLPRLQEIQADSCKGFGISIECEDNNGPLKFTVSPNKIHLYLSSCKLTDEHLFICLSGFSNMVHLDISCSNFTVLPPCIKECIHLNTLLLTNCNQLHEISVISPKLREIDALNCTSLTSQSQSVLLSQEFHETGEKTVMLPGSSIPEWFDHCSSERSISFYARKRFPSICVSVVFGVLENLPHHFLVRFCLIINGHKTILSPCSSLSIVKEHVWLFDLRAFIKNHNLRIYFKQHGWNHVEVSCEDCEDEHFMAQAVHGLRRMTIVKWYGIHVYRQETRMENILFTSAKTLQEKNTNFERFNEDNYPLSKRQCK*	1062

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4693	1061	Pfam	TIR domain	17	182	IPR000157	GO:0007165
	Tpr3g4693	1061	PRINTS	Disease resistance protein signature	214	229	-	-
	Tpr3g4693	1061	PRINTS	Disease resistance protein signature	289	303	-	-
	Tpr3g4693	1061	PRINTS	Disease resistance protein signature	378	392	-	-
	Tpr3g4693	1061	PRINTS	Disease resistance protein signature	677	693	-	-
	Tpr3g4693	1061	SUPERFAMILY	L domain-like	536	873	-	-
	Tpr3g4693	1061	Gene3D	Ribonuclease Inhibitor	527	691	IPR032675	-
	Tpr3g4693	1061	Gene3D	-	178	339	IPR027417	-
	Tpr3g4693	1061	Pfam	NB-ARC domain	196	399	IPR002182	GO:0043531
	Tpr3g4693	1061	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	11	1047	-	-
	Tpr3g4693	1061	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	156	IPR035897	-
	Tpr3g4693	1061	ProSiteProfiles	TIR domain profile.	15	176	IPR000157	GO:0007165
	Tpr3g4693	1061	Gene3D	-	347	427	IPR042197	-
	Tpr3g4693	1061	SUPERFAMILY	"Winged helix" DNA-binding domain	415	519	IPR036390	-
	Tpr3g4693	1061	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	437	IPR027417	-
	Tpr3g4693	1061	SMART	till_3	16	153	IPR000157	GO:0007165
	Tpr3g4693	1061	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	1047	IPR044974	GO:0006952
	Tpr3g4693	1061	Gene3D	Ribonuclease Inhibitor	692	910	IPR032675	-
	Tpr3g4693	1061	Gene3D	-	10	177	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4693	Tpr-Chr3	51906094	51911568	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g4693	67	761	WRKY Transcription Factor Family	AT4G12020	29.380	4.90e-70	254

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4693	-		-	gmx:100796191	1325.46