Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4684 ATGGAAAAGAGGGAATTTTCTGAATTGCTGTCGAAGATGAAAGTTTTGACCGATGAGGTTGTTTCTTTTGCTAAAAATTCTGAAATTGAGGTAGAGGCTTTTTCTGAGTTTGGCATTTTGGTTGAGAAATTGCCACCAATCTTGAATGAATTGAGTGATAATAGCACTGTTTTGGACAAGCCATCAATTCGAAAATCGTTGGAATCTCTTGAGAATGAGTTACGGCGTGCTAAAACTTTAACGAAAAGCTCAAATTTGAGACACCCTATTAAGCAAATTGAGGACATGACACATGATATCGGTCGGTCGTTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTTTCCATTGATTTTAGAGAAAAAATTGGTACATTGCAAAGACAGATGATGAATGCAAGATTTGATGGTAGTTCAAGTATCACTTCGAGTCCAAAATCGGAACTTTTCGCGAATGAAACGAAGACAGTTTGGGAAATAGAAGAGGAAATCGTTAATGTTTCCATTGATGATGTTATTTTGCAACTTAAGAATGGTAGTGACGAAGAATTTGCAGTTTCACTTCTGAGACTAAAGGAGTTCATGAGAAATGAAAAAATCGACGGCGGTTTGATTAATGAGGAAGCAATTATTGCTATTCTTTTCAAGCGTCTAGTTTCGTGTAAGGCAGACAATAGGTTATCCATAATTCAATTGCTAAGAAGTATTGCTTTTCAGAATGACGAGAAAAAGGAAAAGATGGTTGAGATTGAGTTTTTATCGGCAGTGGTGAAGTCTCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGACCTCTCTAATGTTTCAGCAGTTCGAAGGCGGATCGGAAGAATTCAAGGGTGCATCGTTATGTTGGTCGCCATCCTTAATGGAGATGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATTTTGTCTAGTAATAACCAAAACGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATTCTTATGGCAACCGCACTTTCCAGGTTGGAACTCACTGATCACAGCAAACTTACCCTTGGAGAAGATGGAGCGGTCGAGCCCCTTGTCAAAATGTTTATCACTGGAAAACTTGAATCCAAGTTATCATCGTTAAACGCACTACAAAATCTGTCTACCTTGACCGAGAACGTGCAACGTTTAATTCGATCAGGAATCACAGGATCTTTGCTCCAACTTCTTTTCTCTGTAACATCAGTTCTGATGACTCTAAGGGAGCCTGCATCGGCTATTCTTGCCAGAATTGCTCAGTCCGAATCTATTCTCGTCAACGAAGATGTAGCTCAACAGATGCTTTCACTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATGTCTTCTCATCTTGGTGCATCCAAAGTGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAACTTCTTTTACCCTTTCTTAAGGAAAGTAACACCAATATCAGGTGTAAGGTCTTGAATTTGCTATGCACACTCTCTAAAGATATAACCGATGAGTTGACCGAATATCTTGACGAAACTCATCTTTTCAACATCGTTAATATTGTCTCATCATCCACATCAGAGAGCGAAAAAGCAGCTGCGGTTGGCATACTGAGTAATCTTCCTGCTAGCGATAAAAAAGTAACTGATATACTAAAGAGGGCAAATTTGCTACCGATTTTGATATCCATTTTAAATACTAGCAATGCAAGTAAATCGCCAGCAGCAAATAGCTTAACCGAGAATGCTGCCGGTGTTATAAACCGCTTCACCAATTCAAATGACAAGAAACTACAACTTGTTTCAGTACAACACGGGGTGATTCCTTTGCTCGTTAAATTGCTCTCAACAACTTCACCAATCACAAAATCAAGGGCTGCAAACTCTTTAGCTCAATTATCACAAAATTCTCTTTCTCTTAGGAAATCTAGAAAGGCAAGGTGGTTATGTGTTCAACCTTCATCAAATGCATATTGTGAAGTTCATGATGGATATTGCTTTGTAAATAGCACATTTTGTTTGGTCAAAGCAGGCGCCATTTCTCAACTTATCCAAATATTGGAAGATAAAGAAAAGGAAGTAGTCGAAGCTTCTCTTGTTGCGCTTTCGACTCTTTTGCAAGATGAAATTTGGGAAGGTGGTGTGAGTTTCATTGAGAAGTTATCAGGTGTGCAGGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTAAAATATGGTCAATATGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGCTTGAGCTTTTGCAAGCTCAATCAAGTTACTTTTGA 2484 0.3877 MEKREFSELLSKMKVLTDEVVSFAKNSEIEVEAFSEFGILVEKLPPILNELSDNSTVLDKPSIRKSLESLENELRRAKTLTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNARFDGSSSITSSPKSELFANETKTVWEIEEEIVNVSIDDVILQLKNGSDEEFAVSLLRLKEFMRNEKIDGGLINEEAIIAILFKRLVSCKADNRLSIIQLLRSIAFQNDEKKEKMVEIEFLSAVVKSLTRDSEERREAVGLLLDLSNVSAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAVEPLVKMFITGKLESKLSSLNALQNLSTLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKESNTNIRCKVLNLLCTLSKDITDELTEYLDETHLFNIVNIVSSSTSESEKAAAVGILSNLPASDKKVTDILKRANLLPILISILNTSNASKSPAANSLTENAAGVINRFTNSNDKKLQLVSVQHGVIPLLVKLLSTTSPITKSRAANSLAQLSQNSLSLRKSRKARWLCVQPSSNAYCEVHDGYCFVNSTFCLVKAGAISQLIQILEDKEKEVVEASLVALSTLLQDEIWEGGVSFIEKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGQYAQVVLIDLAQKSDSRLKSTVAKVLAELELLQAQSSYF* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4684 827 Gene3D - 186 485 IPR011989 -
Tpr3g4684 827 Gene3D - 486 678 IPR011989 -
Tpr3g4684 827 SMART arm_5 321 361 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 488 528 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 573 620 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 239 278 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 403 446 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 622 663 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 695 735 IPR000225 GO:0005515
Tpr3g4684 827 SMART arm_5 362 402 IPR000225 GO:0005515
Tpr3g4684 827 Coils Coil 60 87 - -
Tpr3g4684 827 SUPERFAMILY ARM repeat 337 782 IPR016024 -
Tpr3g4684 827 Gene3D - 692 824 IPR011989 -
Tpr3g4684 827 SUPERFAMILY ARM repeat 169 423 IPR016024 -
Tpr3g4684 827 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 827 - -
Tpr3g4684 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4684 Tpr-Chr3 51815446 51819203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4684 124 778 U-box Gene Family AT1G68940 26.648 8.62e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4684 K08332 - gmx:100791453 1263.06