LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4672	ATGGAACAACCAACACTACTTTCTTTGTCTTCTTCGTTCACATGTGATTGGACTTATGATGTTTTTCTCAGCTTTAGAGGCACTGATACTCGAAACAACTTCACCGGCAATCTTTATAATTCTCTACAGCATCAAAGAGGTATACAAACTTTCATTGATGACGAGGAAATTCAAAAAGGAGAACAAATCAAAGCTACTCTTCTTCAAGCAATCAAAGAATCAAGAATTTTCATTGCTATTATCTCCCCTAACTATGCATCTTCAACGTTTTGTTTGACCGAACTTGTTACCATCCTTGAGTGCTGTAAATCACAAGGAAGGTTGTTTTTACCGGTTTTTTATGATGTGAATCCATCCCAGATTAGAAACATAACTGATACTTATGCTGAAGCTTTTGCAAAACATGAGGTGAGGTTTGGAGATGAGAAGGAAAAGGTGCAGAAATGGAGGGATGCTTTACATCAAGCTGCTAATATGTCTGGATGGCATTTCAAACCGGGGTCTGAATCAGAATATAAATTTATTGAAAAGATAGTTGAAGAGGTCTCAATAAAGATCAACCGCATTCCTTTGCATGTTGCAAACAAACCAGTTGGATTGGAGTCTCGAGTGTTAGAAGTAACATCTCTCCTTGGACTTGAATCTGATGAGAGTGTCAACATGGTAGGAATTTATGGAATCGGTGGAATAGGAAAATCAACAACTGCTCGTGCTGTGCATAACTTGATTGCAGATCAATTTGAAGGTGTGTGTTATCTGGCTGACATAAGAGAGAGGTCGACTAATCATGATCTTGCACAACTCCAAGAAACACTACTTTCTGAAATACTCGGGGAAAAGGATATAAAAGTGGGAGATGTACACAAAGGAATTTCAATAATTAAAAGAAGGCTCCAAAGAAAGAAAGTCCTTTTGATTCTTGATAATGTTAACAAAGAGAAGCAGTTACAGGTACTCGCAGGAGGACATGATTGGTTTGGCTTCGGCAGCAAGATCATAATCACTACAAGGGACAAGCATTTGCTGGCTACTCATGGAATTGTGAAATTATATGAGGTTAAACAACTAGAAGATGAAAAGGCTCTTGATTTATTTAGTTGGCATGCATTTGAAAATAATTTTTTTGATCCAGGTTATGTAGATATTGCAAAACATGCAGTGTCTTATTGTCACGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTATCTGTATGGAAATCCTCATTAGATAAATATGAAAGAGTCATTCGTAAAGACATCCATGAAATTCTGAAAGTTAGCTATGATGATTTGGAAGAAAATGAGAAGGGTATTTTTTTAGACCTAGCCTGTTTCTTTAATTCTTATGAAATATGCTATGTCAAAGAAATACTATACTTACATGGTTTTCATGTGGAAGATGGCATACAAGAGCTAACTGACAAGTGTCTCATGAAAATTGATGTCAATGGTCGTGTGAGAATGCATGACTTGATTCAAGACATGGGCAGAGAAATTGTGAGGCAGGAATCAACATTGGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACAAGGGGACTGATACAATTGAAGTCATAATTGCTTGCTTGCGCAAAGGCAGAAAAGTGAAATGGTGTGGAAATGCCTTCGGGAAGATGAAGAACTTGAGAATTCTTATAATTAGAAATGCACAATTTTCCATAGGTCCTCAAATTTTTCCAAATAGTTTGAGAGTTCTTGATTGGAGTGGATATGAATCATCCTCTTTACCATCCGGTTTTAATGCCAAGAATCTTATAATACTGAATCTTCCTGAAAGTCGCCTTAGATGTTTCGAATCACTCAAGGTTTTTGAGAAGTTAAACTTTCTAGATTTTGAAGGTTGCAAGTTCCTAACTGAAATACCTAGTTTATCTAGATTACCAAATTTAGGGGCACTGTGTCTTGATTATTGCACTAGTTTAATTAGAATCCATGACTCAGTTGGGTTTCTTGACAGACTTGTGTTATTAAGTGCTCAAGGGTGCACCCAACTAGAAAGTTTGGTTCCTTCCATCAACTTGCCATCTTTAGAGACTTTAGATCTAAGGGGTTGCTCATGTCTTGTGAGCTTTCCCGAAGTAGTAGGAGTGATGGAGAATATAAAAGATCTCTATTTAGACCAGACTGCCTTAGAACAATTGCCTTTTACCATTGGAAATATGGTTGGGCTTCAACGTTTGTTCTTGAGGGGATGCCAAGGGATGATTCGGCTACCAAGCTACATATTGCCCAAATTTGAGATAATAACATCTTATGGTTGTAGAGGATTTCAATCATCTGAAGATAAAGAAAATGTGAGTCCAAAAGTGTTTGCAAATGCTATATGTGTTTATAATGATTATGGACAGTCCTACCTTAATTTGTTTGCTCGTTATATAACCTCCAACAATATAATAGAAATATGTAGTCCTCGGTGCGAATCTGAATTCCTTGCGTTCGATCCTTCATCTGGGAGAATGAGTTGGGATAAGCTTATTTGTAATAAATCATCATTGCGTTTTTGGTTCAGAAAAAAATTCCCCATTATAGCTCTATCTTGTAATGTAGAACCTGAAAAGCATTTGGACAACATGGTATTGGATTTCAAGTTGACTGTAGTCATCAATGGCACTAAGCACCTCACTTCTTCATGTATATACATATTTTATACACAAAAAACGACGGACCAAATGCTTTGTTGTGATCTACAATGCAAAGCAGATGGTGTATTTTCAGAGAATGGGTGGAATCATGTGGAGATTTTATGTGAAATGGAACATCTCATGCCATGTGATTCTACTAGGTCCGTGGCCTATCAGTACTGGACAACTAAGAATATTCTAAAGGGGTCTTTCATATATGTCTACTCAGATAACAAAGAGGATGATTACAGCTTAATTAGCAATCCTGATTTTCCTCTGTCAACTGAACAGAAATTTCAAGAGGATTACTTTCTCCTAATGAAGCAGGTGCTGATAGAATCCGGCACTAGAAGAGATGCAGTACCAGATCTCGTCCCTAGGGAGACTAAAGCTTGA	3090	0.3728	MEQPTLLSLSSSFTCDWTYDVFLSFRGTDTRNNFTGNLYNSLQHQRGIQTFIDDEEIQKGEQIKATLLQAIKESRIFIAIISPNYASSTFCLTELVTILECCKSQGRLFLPVFYDVNPSQIRNITDTYAEAFAKHEVRFGDEKEKVQKWRDALHQAANMSGWHFKPGSESEYKFIEKIVEEVSIKINRIPLHVANKPVGLESRVLEVTSLLGLESDESVNMVGIYGIGGIGKSTTARAVHNLIADQFEGVCYLADIRERSTNHDLAQLQETLLSEILGEKDIKVGDVHKGISIIKRRLQRKKVLLILDNVNKEKQLQVLAGGHDWFGFGSKIIITTRDKHLLATHGIVKLYEVKQLEDEKALDLFSWHAFENNFFDPGYVDIAKHAVSYCHGLPLALEVIGSQLFGKSLSVWKSSLDKYERVIRKDIHEILKVSYDDLEENEKGIFLDLACFFNSYEICYVKEILYLHGFHVEDGIQELTDKCLMKIDVNGRVRMHDLIQDMGREIVRQESTLEPGRRSRLWFSDDIVHVLEENKGTDTIEVIIACLRKGRKVKWCGNAFGKMKNLRILIIRNAQFSIGPQIFPNSLRVLDWSGYESSSLPSGFNAKNLIILNLPESRLRCFESLKVFEKLNFLDFEGCKFLTEIPSLSRLPNLGALCLDYCTSLIRIHDSVGFLDRLVLLSAQGCTQLESLVPSINLPSLETLDLRGCSCLVSFPEVVGVMENIKDLYLDQTALEQLPFTIGNMVGLQRLFLRGCQGMIRLPSYILPKFEIITSYGCRGFQSSEDKENVSPKVFANAICVYNDYGQSYLNLFARYITSNNIIEICSPRCESEFLAFDPSSGRMSWDKLICNKSSLRFWFRKKFPIIALSCNVEPEKHLDNMVLDFKLTVVINGTKHLTSSCIYIFYTQKTTDQMLCCDLQCKADGVFSENGWNHVEILCEMEHLMPCDSTRSVAYQYWTTKNILKGSFIYVYSDNKEDDYSLISNPDFPLSTEQKFQEDYFLLMKQVLIESGTRRDAVPDLVPRETKA*	1030

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4672	1029	SUPERFAMILY	"Winged helix" DNA-binding domain	426	532	IPR036390	-
	Tpr3g4672	1029	SUPERFAMILY	L domain-like	555	823	-	-
	Tpr3g4672	1029	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	449	IPR027417	-
	Tpr3g4672	1029	Gene3D	-	15	187	IPR035897	-
	Tpr3g4672	1029	ProSiteProfiles	TIR domain profile.	17	186	IPR000157	GO:0007165
	Tpr3g4672	1029	SMART	AAA_5	218	356	IPR003593	-
	Tpr3g4672	1029	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	716	IPR044974	GO:0006952
	Tpr3g4672	1029	SMART	till_3	18	159	IPR000157	GO:0007165
	Tpr3g4672	1029	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	162	IPR035897	-
	Tpr3g4672	1029	Pfam	NB-ARC domain	214	436	IPR002182	GO:0043531
	Tpr3g4672	1029	PRINTS	Disease resistance protein signature	221	236	-	-
	Tpr3g4672	1029	PRINTS	Disease resistance protein signature	297	311	-	-
	Tpr3g4672	1029	PRINTS	Disease resistance protein signature	390	404	-	-
	Tpr3g4672	1029	PRINTS	Disease resistance protein signature	696	712	-	-
	Tpr3g4672	1029	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	716	-	-
	Tpr3g4672	1029	Pfam	TIR domain	19	185	IPR000157	GO:0007165
	Tpr3g4672	1029	Gene3D	Ribonuclease Inhibitor	531	788	IPR032675	-
	Tpr3g4672	1029	Gene3D	-	355	439	IPR042197	-
	Tpr3g4672	1029	Gene3D	-	188	349	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4672	Tpr-Chr3	51712263	51717281	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g4672	13	778	WRKY Transcription Factor Family	AT4G12020	32.576	5.95e-92	321

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4672	-		-	mtr:MTR_3g020650	1561.2