LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4671	ATGGAACAACCAACACTACCTTCTTTGTCTTCTTTCACATGTCATTGGACTTATGATGTTTTTCTCAGCTTTAGAGGCATTGATACTAGAAACAATTTCACTGGTAAACTTTACAATTATCTACAGCATCAAAGAGGAATACAAACTTTCATTGATGATGAAGAAATTCAAAAAGGAGGACAAATCACACCTACTCTTCTTCAAGCCATTAAAGAGTCTAGGATTTTCATTGCTATTTTGTCCCCTAACTATGCATCTTCAACTTTCTGTTTGAATGAACTTGTTACCATCCTTGAGTGTTCAAAGTTACAGGGAAGGTTGTTTTTGCCGATTTTTTATGATGTGAATCCATCCCATGTTAGAAACATAACCGGTACTTATGCTGAAGCTTTTGCAAAACACGAGGCGAGGTTTGGAGATGAGAAGGAAAAGGTGCAGAAATGGAGGGATGCTTTACATCAAGCTGCTAATATGTCTGGATGGCATTTCAAACCAGGGTTTGAATCAAAGAGTAAGTTTATTGGGAAGATAGTTGAAGAGATCTCGATAAAGATCAACCGCGTTCCTTTGCATGTTGCAAACAACCCAGTTGGGTTGGAGTCTCGAATGTTAGAAGTGACATCTCTCCTTGGACTTGAGTCCGATGAGAGAGTCAACATAGTAGGCATTTATGGAATCGGCGGAATTGGCAAATCAACAACTGCTCGTGCTGTGCATAACTTGATTGCTGATCAATTCGAAGGTGTGTGTTTTCTTGCTGACATAAGAGAGAGGGAAATTCATCATGGTCTTGTACAACTCCAAGAAACATTACTTTCCGAAATACTTGGGGAGAAGTATATTAAAGTGGGTGATGTTAACAAAGGAATTTCAATAATTAAAAGGAGTCTTAAAAGAAAGAAAGTCCTTTTGATTCTTGATGATGTTGACAAAGAAAAACAGTTGCAGGCACTTGTAGGAGGACATGATTGGTTTGGCTCCGGCAGCAAGATCATAATCACTACAAAAGACAAGCATTTGCTGGCTACTCATGGAATTGTGAAAGTATATGAGGTTAAACAACTAGAAGATGAAAAGGCTCTTGATTTATTTAGTTGGCATGCATTTAAAAATAAAAATATTGATCCATCGTATTTGGATGTTGCAAAACGTGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAAGTGACAGGTTCTCAATTGTTTGGAAAAAGTTTAGATGTATGGAAATCCTCTTTAGATAAATATGCAGGAGTCCTTCGTAAAGACATCCATGAAATTCTGAAAGTTAGCTATGATGATTTGGAAGAAGATGTGAAGGGTATTTTTCTAGATATTGCTTGTTTCTTCAATTCTTACGATATAGGCTATGTCAAAGAAATACTATACTACCATGGTTTTCATGCGGAAGGTGGCATACAAGAGCTAACTGACAAATCTCTCATGAAAATTGATACCAATGGTTGTGTGAGAATGCATGAGCTGATTGAAGACATGGGCAGAGAAATTGTGAGGCAGGAATCAACTTTGGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACAAGGGAACTGATAGAATTGAAGTTATAATCGTCGACTTGCATAAAGACAGAAAAGTGAACTGGTGTGGAGATGCCTTTGGGCAGATGAAGAACTTGAGAATTCTTATAATTAGAAATGCACAATTTTCCAGAGGTCCTCAAATTCTTCCAGATAGTTTGAGAGTGCTTGATTGGCGTGGATATCAATCACCCTCTTTACCATCCGAGTTTAATCCCAAGAATCTTGCAGTAATGCATTTGCCTGAAAGTCACTTTGAATGTTTCGAATCTGTCAAGGTCTTTCATACATTGAGCTTTCTGAATTTTGAAGGTTGCAATTTCCTAATTGAAGTACCTAGTTTATCTAGTGTACCAAATTTGGGGTCATTATGTCTTGATGACTGCAGTAGTTTAATTAGAATCCATGACTCAGTTGGGTTTCTTGACAAACTTGTTTCATTAAGTGCTCAAGATTGCACCCAACTAGAAAGTTTGGTTCCTTCCATCAACTTGCCATCATTAGTTACTTTAGACCTAAGTGGTTGCTCGCGTCTTGAGAGCTTCCCAGAAGTAGTAGGAATGATGGAGAATATAAAAGATGTTTACTTAGACCATACTAGCATAAAACAATTGCCTTCTACAATTGGAAATCTTGTTGGGCTCCAACGTTTGTTCTTGAGGAATTGCTTTCAGCTACCGAGCTACATATTGCCTAAAGTTGAGATAATAACAACTTATCGCTGTAGGGGATCTCAATCATCTGAAAATGAAGAAAAAGTGAATCCAAAAGTATTTGCAAATGCCATGTGTGTTTATAATGAATATGGGAAGTCCTTTCTTAATGTGTATTCTAGTTCTAGTAATAATTGCTCCAACGATGTCATAGAAGTATGTAGTCCTTTGGAGAATGACCGGGGAAAAAATCTTGTGAATGATCAATTAGAAACCACTTTTTTTAGCCACAAAGAGGGGAGAACAAAACTGGGTAAGCTTAGAAGGAACATATCATCAATGCATTTTTTGTTCCGAAAGAAATTCCCCAGGATAGCTCTATGGTTTTTTGTAGCCTCCAAAAGAAATAAATCTGGAAAGGATTTCAAGTTGAAAGTACTCATCAATGGCACTACGCAACTCACTTCTTCATGTGAATACATATTTTATTCACAAAAAGCGACGGAACATATGATTTGCTGTGATCTACAGTGCAATGTGGAGGGTGTATTTTCAGAGTATGAGTGGAACCGGGTGGAGATTTTATGTGAGATGGAACATCTCATGCCCTGTGATTCTAAAAGGGTCACGACCCACCAGGACTGGACCACTAAGACAATTCTAAAGTGGTCTCTCCTATATGTCTACCCAGGATACAAAGAGGGTGATTTCGACATATGTGACAATCTTGCTTTACCTTCTGATTTAAGAAAACAAAAATATACAGCTCTTTATTTGGCAATTGAAAAAGCTAAAGAGATGCAGGGAATTCATACAAGAGTATAG	3075	0.3763	MEQPTLPSLSSFTCHWTYDVFLSFRGIDTRNNFTGKLYNYLQHQRGIQTFIDDEEIQKGGQITPTLLQAIKESRIFIAILSPNYASSTFCLNELVTILECSKLQGRLFLPIFYDVNPSHVRNITGTYAEAFAKHEARFGDEKEKVQKWRDALHQAANMSGWHFKPGFESKSKFIGKIVEEISIKINRVPLHVANNPVGLESRMLEVTSLLGLESDERVNIVGIYGIGGIGKSTTARAVHNLIADQFEGVCFLADIREREIHHGLVQLQETLLSEILGEKYIKVGDVNKGISIIKRSLKRKKVLLILDDVDKEKQLQALVGGHDWFGSGSKIIITTKDKHLLATHGIVKVYEVKQLEDEKALDLFSWHAFKNKNIDPSYLDVAKRAVSYCHGLPLALEVTGSQLFGKSLDVWKSSLDKYAGVLRKDIHEILKVSYDDLEEDVKGIFLDIACFFNSYDIGYVKEILYYHGFHAEGGIQELTDKSLMKIDTNGCVRMHELIEDMGREIVRQESTLEPGRRSRLWFSDDIVHVLEENKGTDRIEVIIVDLHKDRKVNWCGDAFGQMKNLRILIIRNAQFSRGPQILPDSLRVLDWRGYQSPSLPSEFNPKNLAVMHLPESHFECFESVKVFHTLSFLNFEGCNFLIEVPSLSSVPNLGSLCLDDCSSLIRIHDSVGFLDKLVSLSAQDCTQLESLVPSINLPSLVTLDLSGCSRLESFPEVVGMMENIKDVYLDHTSIKQLPSTIGNLVGLQRLFLRNCFQLPSYILPKVEIITTYRCRGSQSSENEEKVNPKVFANAMCVYNEYGKSFLNVYSSSSNNCSNDVIEVCSPLENDRGKNLVNDQLETTFFSHKEGRTKLGKLRRNISSMHFLFRKKFPRIALWFFVASKRNKSGKDFKLKVLINGTTQLTSSCEYIFYSQKATEHMICCDLQCNVEGVFSEYEWNRVEILCEMEHLMPCDSKRVTTHQDWTTKTILKWSLLYVYPGYKEGDFDICDNLALPSDLRKQKYTALYLAIEKAKEMQGIHTRV*	1025

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4671	1024	Pfam	NB-ARC domain	213	434	IPR002182	GO:0043531
	Tpr3g4671	1024	SUPERFAMILY	L domain-like	541	764	-	-
	Tpr3g4671	1024	Gene3D	-	11	185	IPR035897	-
	Tpr3g4671	1024	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	448	IPR027417	-
	Tpr3g4671	1024	PRINTS	Disease resistance protein signature	220	235	-	-
	Tpr3g4671	1024	PRINTS	Disease resistance protein signature	296	310	-	-
	Tpr3g4671	1024	PRINTS	Disease resistance protein signature	389	403	-	-
	Tpr3g4671	1024	PRINTS	Disease resistance protein signature	695	711	-	-
	Tpr3g4671	1024	ProSiteProfiles	TIR domain profile.	16	185	IPR000157	GO:0007165
	Tpr3g4671	1024	Gene3D	-	354	438	IPR042197	-
	Tpr3g4671	1024	Pfam	TIR domain	18	184	IPR000157	GO:0007165
	Tpr3g4671	1024	SMART	AAA_5	217	355	IPR003593	-
	Tpr3g4671	1024	SMART	till_3	17	158	IPR000157	GO:0007165
	Tpr3g4671	1024	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	12	827	-	-
	Tpr3g4671	1024	SUPERFAMILY	"Winged helix" DNA-binding domain	425	531	IPR036390	-
	Tpr3g4671	1024	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-
	Tpr3g4671	1024	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	827	IPR044974	GO:0006952
	Tpr3g4671	1024	Gene3D	Ribonuclease Inhibitor	537	782	IPR032675	-
	Tpr3g4671	1024	Gene3D	-	186	349	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4671	Tpr-Chr3	51705828	51711331	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g4671	12	758	WRKY Transcription Factor Family	AT4G12020	32.208	6.76e-88	308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4671	-		-	mtr:MTR_3g020650	1486.09