Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4654 ATGTCAAAGAAGAAATCTAGTTTAGGTAGACAAAAAATTCCTATTGAAAAAATACCAAAAAAAAGTCATTTACAAGTTACTTTCTCTAAGCGCCGATCAGGACTATTCAAAAAGGCCAGTGAACTTTGCACTCTTTGCGGTGTTGAGATTGCAATTGTAGTTTTTTCTCCCGCTAATAAAGCATTTTCTTTTGGTCATCCAGAAGTTGAGTCAATCATCGATCGCTATTTGACTCGAAATCCTCCACAAGAATCTAGTGCCCACCAACTTGTTGAGGCTCATAGAAATGCAAATGTGCGCGATCTCAACATCCAATTGACACAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGAGAAGAGATAGAACACATGAGGAAAGCAAGGCAAAGTCAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCTTAAATGAATTGGTCCAATTAAAGGGTTCTATTGAGGAGCTGAAGAATAACATAGGAAAATTTGCTAGCAAATGCATGATGGAACAATCTAATGTACCTTCACCAAATATGGGGGCCAATGGATTTGGACGTTATGATTCACTTGACAACAAATTTGGTCTTGGCATTAATATTGCTCCCCCACCTCCTAATTCTTATTATCTTGGTTTTAGAAATGGGTATCTTTAA 660 0.3758 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLTRNPPQESSAHQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEHMRKARQSQFWWESPIDELGLNELVQLKGSIEELKNNIGKFASKCMMEQSNVPSPNMGANGFGRYDSLDNKFGLGINIAPPPPNSYYLGFRNGYL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4654 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr3g4654 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Tpr3g4654 219 PANTHER MADS BOX PROTEIN 7 177 - -
Tpr3g4654 219 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Tpr3g4654 219 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Tpr3g4654 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr3g4654 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr3g4654 219 Gene3D - 89 180 - -
Tpr3g4654 219 Coils Coil 99 119 - -
Tpr3g4654 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr3g4654 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr3g4654 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr3g4654 219 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4654 Tpr-Chr3 51596928 51597587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4654 5 183 Type I MADS-box Gene Family AT5G60440 53.297 4.77e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4654 SRF-TF 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4654 - - gmx:100793705 340.887