LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4646	ATGTTTTTAGGGTTTCCGTGTTCTCCCTATTTAAATGGATGTTTGTTCATTGTTGAAATTGCACCGCAGCCAACATACGTGCCTCCCTCTCTTTTTTTAAATAATTTTAATCTAAAAAATTTGCTTTTATTCTGCACTGTCTTCTTATTTTTTGAAATGGCTTTGACTGTTGATAATCGTAGTATGTTTTCAAACATTGATGAAATCAACTCTGATAGAGCAACTTGGAATTTTAAGGCTAAGGTCATAAGACTTTGGCAAGTGAGTGATTTTAATCGAGTTAATGTTCCTTTTTCTGTTGAAATGGTGTTAATGGATGAAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAATTTAAACATGAGATAATCGAGGGAAAAGTTTATTCTTTTGAAAATCTTGGTGTGGCATCTAATACTGGAGCTTATAGGACAACACATCATCCTTACAAACTGAACTTTCAGTTTGGCTCCTTGGTTCAGAGGCTTTCCAACTGTGATATTTTGAAGTCTCCATTTACCTTTGTTCCGATTGCTGATATTTTGGGGGGTTGTTATGACACTGATTTTTTAGTTGATGTTATTGGTTTCTTGACTGAGATTGGGCAGGAACGTGAGATCACTAATCAGAATGGTAGTACAACCAAGCTGAATGTCATTGCATTGGAAGCTGATGGGCATAAGCTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTTAATACCTTTGTTGGAGCTGGTGATCTGACAAATGCTGTGGTTATTGTTCAGCTTGCTAAGGCTAAGATCTTCCAAGACAAGATACATATCCAGAATTGCATGAATTGTTCTGTCTTGATATTTAACCCAAGTTGTGATGAAAGTGTAGCCTTAAGGGCAAGTCTCAATGGTTCTGATGAGAATCCGTCTCCATTGACATTTACTCAAGTTAGTACAGAGTCAAGTGTAAAACCACTTGATGAGTTTCTGCACAATACTCCAAGGATTACCTTGCAAGGTCTCAAGGATGCTACAACTGAATCATCACATGTTGTTGCTGCAACTGTTAAGAGGACTTTAAATCCCAATAGTTATTGGTATACATCATGTTTGTGTGGCAAGGCTGTTGTGCCGGATTCAAAGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTTCAAAGGTTGTTCCTAGGTTTTGTGTCAAGGTTAGAGTCATGGATGATACTGATTCTGCCATTTTTGTAATCTTTGACAAGGAAGCAAGTTCCATATTCAATATGACTTGTGCTGATATGATTCAAAATGGAGAAAATGATGTTGGTGAAAGAATTGTTCCACCTCAAATTGATGAAACACTGATTGATCAAACCTGGCTTTTTAAGGTTGAAGCTAAACCTTTTCAGAATCCTAGGTTTGAGCAATCTTTCCGTGTGAGGAAGATTTGTACCGATGAGAGTATAATAAAGGAATTTAAGGACAAGTGGGATAATGAGGATGCTGTGTATCTTAAAAATACAAATGAGGATGGATCTTTGAGTACTTTGCTGGAGAAAGGGAAAGATGATTATGTTGTTGGGTCGTCAAACGTCCTTTGTGAGGAGTTTGAAAACTTTAGTGGAGATTCTGACAAGGGAAAAGGTTTGATTGTTGGACGGACAACTGTTGATGTTTCCCAAGATTTGATGACGAAGTTTTCATCAGCTATTGTTAATCTTGGCGATGACTTTGATAGTACTCCTCTTTGTATTAAACCAAAGACATCCATTGTGAAACAAATTTCATCTGCTGCTGTTGTGAACCCTAAGGCCGTTGTTGATGGTGTGAAGACAATTAAACCTGATGATAATGCAAAGCCAATCAACTCTGCTGGATCCGTCAATCAAATCAACTCTGCTGGAGCTGTGAAGTCTCAACAATCTGCTGCTGTTCTGAAACCAGTTGACTGTACTACTGTTGAGGATTTGAGCCTAACAGCTAAAGCCTCTGTTAGGCCATGTGGACAGCGAAAGAAAGTTGTTCCTAAGAGAGTGTCCCCTCAACATGAAGATCGAGATGAGGATGATAATGCTCCTATCAAGTTGTTGAAAAGGGCGGTCAAGATTGAGAAGATTTGA	2112	0.3793	MFLGFPCSPYLNGCLFIVEIAPQPTYVPPSLFLNNFNLKNLLLFCTVFLFFEMALTVDNRSMFSNIDEINSDRATWNFKAKVIRLWQVSDFNRVNVPFSVEMVLMDEDGAKIHATIKKTLIYKFKHEIIEGKVYSFENLGVASNTGAYRTTHHPYKLNFQFGSLVQRLSNCDILKSPFTFVPIADILGGCYDTDFLVDVIGFLTEIGQEREITNQNGSTTKLNVIALEADGHKLQCTLFGPYVDELNTFVGAGDLTNAVVIVQLAKAKIFQDKIHIQNCMNCSVLIFNPSCDESVALRASLNGSDENPSPLTFTQVSTESSVKPLDEFLHNTPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEKCNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMTCADMIQNGENDVGERIVPPQIDETLIDQTWLFKVEAKPFQNPRFEQSFRVRKICTDESIIKEFKDKWDNEDAVYLKNTNEDGSLSTLLEKGKDDYVVGSSNVLCEEFENFSGDSDKGKGLIVGRTTVDVSQDLMTKFSSAIVNLGDDFDSTPLCIKPKTSIVKQISSAAVVNPKAVVDGVKTIKPDDNAKPINSAGSVNQINSAGAVKSQQSAAVLKPVDCTTVEDLSLTAKASVRPCGQRKKVVPKRVSPQHEDRDEDDNAPIKLLKRAVKIEKI*	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4646	703	CDD	RPA1_DBD_C	340	498	IPR013955	-
	Tpr3g4646	703	Gene3D	-	62	167	IPR012340	-
	Tpr3g4646	703	CDD	RPA1_DBD_A_like	79	165	-	-
	Tpr3g4646	703	Pfam	Replication factor-A C terminal domain	352	464	IPR013955	-
	Tpr3g4646	703	SUPERFAMILY	Nucleic acid-binding proteins	178	304	IPR012340	-
	Tpr3g4646	703	CDD	RPA1_DBD_B_like	198	290	-	-
	Tpr3g4646	703	MobiDBLite	consensus disorder prediction	674	689	-	-
	Tpr3g4646	703	SUPERFAMILY	Nucleic acid-binding proteins	333	465	IPR012340	-
	Tpr3g4646	703	MobiDBLite	consensus disorder prediction	667	689	-	-
	Tpr3g4646	703	PANTHER	REPLICATION FACTOR A 1, RFA1	70	432	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Tpr3g4646	703	SUPERFAMILY	Nucleic acid-binding proteins	63	169	IPR012340	-
	Tpr3g4646	703	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	70	432	-	-
	Tpr3g4646	703	Pfam	Domain of unknown function DUF223	101	194	IPR003871	-
	Tpr3g4646	703	Gene3D	-	323	488	IPR012340	-
	Tpr3g4646	703	Gene3D	-	171	309	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4646	Tpr-Chr3	51474413	51478384	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g4646	23	428	Core DNA Replication Machinery Family	AT2G06510	21.801	2.62e-16	80.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4646	-		-	mtr:MTR_4g036240	592.423