Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4642 TATGGATTAGGTTCGCCGTATCAGTGGCTAAGGGAGTTAAGATGTGACTCTAATAGCTCAAATCCAATAAGCCTTCTTATTGAGTGTGCAAAATGTGTTGCATCTGGAAGCATAAAAAATGCAGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTTATGGTAGTGCCGTGCAAAGAGTGGTCACTTATTTCAGTGAAGCACTTGGATACAAGATAGTCCAACATTTACCTGGTGTATACAAAGCTCTCAATTCCTCGAAAACTTCATTGTCTTCAGACGATATCCTTGTTCAGAAATACTTCTATGACCTCTGTCCCTTTTTGAAGTTTTCATACCTGATAACAAACCAAGCAATTGTCGAATCAATGGAAAGTGAAAAAGTTGTTCATATTATTGATCTCCATTGTTCCGAGCCAGCACAATGGATAAATCTTATACAAACTTTAAAGAAACGTCATGGAGGTCCGCCTCATCTCAAAATTACAGGCATTCATGAAAAGAAGGAGGTATTGGACCAAATGAGCTTTCATTTGACAACTGAAGCCGGAAATTTGGATTTTCCTTTACAGTTCAATCCAATTGTTAGCAAACTCGAAGATGTTGATTTCGAAAACTTGCCTGTCAAGACAGGAGATGCTGTTGCAATTACTTCTGCTCTTCAGCTGCATTCTCTCCTTGCAACCGATGATGAAATGGTTGGGAAGATCTCGCCAGCAGGACCATCCTCTATCAATCTGCAGAGAGCAGGACAGATGGGTCAGAGGACTTTCGCAGAGTGGCTTGAAAGAGATATGATCAATGCATATATCTCGAGTCCCGATTCATCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAACGCCATGCGGAAACTAAAACCGAAACTTTTAGTGATTACTGAACAGGAATCAAATCTAAACGGATGTAATTTAATGGAGAGAATTGACCGAGCGTTGTACTTTTACACTTCACTTTTTGACTGCTTGGACTCAACTGTTACGAGAACATCAGTGGAGAGACTAAAACTTGAAAGCATGCTTCTTGGAGAGCAAATAAAGAACATCATTACTTGTGAAGGAGTTGATAGAAAGGAGAGGCATGAGAAGGTTGAGAAATGGATTAGAAGGCTTGAAATGGCTGGATTTGAGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGCAACAAGTCTATTGCAGCGATAG 1230 0.3976 YGLGSPYQWLRELRCDSNSSNPISLLIECAKCVASGSIKNADIGLEYISQISSPYGSAVQRVVTYFSEALGYKIVQHLPGVYKALNSSKTSLSSDDILVQKYFYDLCPFLKFSYLITNQAIVESMESEKVVHIIDLHCSEPAQWINLIQTLKKRHGGPPHLKITGIHEKKEVLDQMSFHLTTEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGDAVAITSALQLHSLLATDDEMVGKISPAGPSSINLQRAGQMGQRTFAEWLERDMINAYISSPDSSLSPLFLGASPKMGIFLNAMRKLKPKLLVITEQESNLNGCNLMERIDRALYFYTSLFDCLDSTVTRTSVERLKLESMLLGEQIKNIITCEGVDRKERHEKVEKWIRRLEMAGFEKVPLSYNGRIEATSLLQR* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4642 409 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 408 IPR005202 -
Tpr3g4642 409 ProSiteProfiles GRAS family profile. 13 409 IPR005202 -
Tpr3g4642 409 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 2 408 - -
Tpr3g4642 409 Pfam GRAS domain family 23 409 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4642 Tpr-Chr3 51444607 51446448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4642 5 408 GRAS Transcription Factor Family AT1G50420 48.418 1.59e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr3g4642 GRAS 9.2e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4642 - - lja:Lj3g3v0821290.1 687.952