Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4610 ATGTGCTTCTGTCTGAATTTAGTCATTTTGCAGTTAGCGAATCAACTTGAAATAAATGATTCTCTACGGAACAAAGACAACGACGACAACAACAACAACATTGGTGTCGAAATTCAGCAACAAAATTTACCTCCAACAAACGATGATAATCTGCTTCCCATCACAAAATTGACAAAAATCATGGAACGTGCTCTTCCACAACACGCACAAATTTCTGATGATGCTAAGGAAGCAATGCAATTGTGTGTGTCTGAATTTGCGAGGATCATCATGAACGAGGCTAATAAGCGATGTAAGATAGAACGTCGAATGATTGTTAATTCTGAAGATTTAATAAGGGCTGTGAAAATGTTGAAATTTGAGCACTATGCAAAGCCTCTATTTAATTTCTATCAAAACTATCGCAGTGGTAGTAGCAGTGGCCAACGTTGA 432 0.375 MCFCLNLVILQLANQLEINDSLRNKDNDDNNNNIGVEIQQQNLPPTNDDNLLPITKLTKIMERALPQHAQISDDAKEAMQLCVSEFARIIMNEANKRCKIERRMIVNSEDLIRAVKMLKFEHYAKPLFNFYQNYRSGSSSGQR* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4610 143 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 115 IPR003958 -
Tpr3g4610 143 Gene3D Histone, subunit A 40 143 IPR009072 GO:0046982
Tpr3g4610 143 SUPERFAMILY Histone-fold 48 136 IPR009072 GO:0046982
Tpr3g4610 143 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 24 136 - -
Tpr3g4610 143 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4610 Tpr-Chr3 51195269 51195700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4610 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 42.056 7.76e-27 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr3g4610 CBFD_NFYB_HMF 5.9e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4610 K08065 - pvy:116145007 96.6709