Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4596 ATGGCTCTCTATACCAAAACACAACCATACACAAAAACACTAACAATAACCACATTCATTTTCTTCTTCCTTCTACTCACTCTTCCACACTCCACTTCTGCTTCCACTGATTTCAATGCTTCAACCTGTCTTCGAGTTTCTCCCTTGAAATTTATCGATTCTGCCAAAGAAGTTATCACCATTCTAGAACGCGTCACCTCCATTTTATCAGGCTTCAACGTCTTCGGCCACTCTAGTCTCTCAAACGCCATTTCCGATTGCCTTGAATTACTCGATATGTCCTCCGAACAACTTAGTTGGTCCATGTCCGCCACACAAAATCCCAAAGGGAAGGATAACAGTACTGGAAATCTAAGCTCTGACCTAAGAACATGGCTGAGTGCTGTTCTTGTGAATCCAGACACATGTATAGAAGGATTAGAAGGTACAGTTGTGAAGGGTCTTGTATCAAGTGCTCTTGATCTTGTAATGTCCTTAGTGAAGAGTCTTCTAGCTGAAGTAGATCCTAGCAACGATCAACTCGCAATTTCTACCGGTTCTGATCAATTTCCTTCGTGGATTAATGACGAGGATAAGAAGCTGTTGAAGGAAAATGGAGTGGCTGCTGATGCTGTTGTAGCGGCCGATGGAAGTGGCGATTACAAGAAGGTGATGGATGCGATTTCGGAAGCACCTGAATATAGCATGAAAAGATATGTTATATATGTAAAGAAAGGTGTTTATGTTGAAAATGTTGAGATTAGTAAGAAGAAATGGAATATTATGATGATCGGTGATGGTATCGATGCTACTGTTATCTCCGGTGATCGGAATAAAGTCGATGGTTGGACTACATTCCGATCAGCTACCTTTGCGGTAAATGGTCGAGGGTTTATAGCACGCGATATTTCATTTAAGAACACAGCTGGCCCTGAGAAGCACCAAGCAGTGGCATTAAGATCAGATTCTGACCTCTCTGTATTTTATCGGGTTGGGATATTCGGCTATCAAGATAGCCTATATCCCCATGCGATGCGTCAGTTCTACAGAGAGTGCAGAATCGCTGGTACTGTGGATTTCATTTTTGGAGATGCCACAGCCGTGTTCCAGAATTGCCAAATACTAGCCAAGAAAGGAGGTCCTACACAAAAGAACACTATTACTGCTCAAGGACGAAAAGACCCGAATCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCAGCAGACTCTGACCTTCTACCATCGGTTGGAACCATCCAAACATACCTAGGTAGACCCTGGAAGACTTACTCGAGAACAATTTTCATGCAATCCTACTTTAGTAACATAATAAGTCCTGAAGGGTGGTTGGAGATGAACGGAAAGTTTGCTTTGGACACATTGACTTACAATGAGTACATGAACACTGGACCTGGTGCTGGGGTAGCTAGCCGAGTGAAATGGCCAGGGTATCGCGTATTGAATGATTCGAGGGAGGCTGAAAAGTTTACTGTGGCTCAATTTATTGAAGGAAATCTGTGGTTACCTTCCACTGGTGTTGCTTACACTGCTGGTTTGACAGTGTAA 1551 0.4294 MALYTKTQPYTKTLTITTFIFFFLLLTLPHSTSASTDFNASTCLRVSPLKFIDSAKEVITILERVTSILSGFNVFGHSSLSNAISDCLELLDMSSEQLSWSMSATQNPKGKDNSTGNLSSDLRTWLSAVLVNPDTCIEGLEGTVVKGLVSSALDLVMSLVKSLLAEVDPSNDQLAISTGSDQFPSWINDEDKKLLKENGVAADAVVAADGSGDYKKVMDAISEAPEYSMKRYVIYVKKGVYVENVEISKKKWNIMMIGDGIDATVISGDRNKVDGWTTFRSATFAVNGRGFIARDISFKNTAGPEKHQAVALRSDSDLSVFYRVGIFGYQDSLYPHAMRQFYRECRIAGTVDFIFGDATAVFQNCQILAKKGGPTQKNTITAQGRKDPNQPTGFSFQFCNISADSDLLPSVGTIQTYLGRPWKTYSRTIFMQSYFSNIISPEGWLEMNGKFALDTLTYNEYMNTGPGAGVASRVKWPGYRVLNDSREAEKFTVAQFIEGNLWLPSTGVAYTAGLTV* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4596 516 Gene3D - 198 514 IPR012334 -
Tpr3g4596 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 168 IPR035513 -
Tpr3g4596 516 SMART PMEI_2 6 166 IPR006501 GO:0004857
Tpr3g4596 516 Pfam Plant invertase/pectin methylesterase inhibitor 45 151 IPR006501 GO:0004857
Tpr3g4596 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Tpr3g4596 516 CDD PMEI-like_4 30 167 - -
Tpr3g4596 516 ProSitePatterns Pectinesterase signature 1. 228 247 IPR018040 -
Tpr3g4596 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 159 IPR035513 -
Tpr3g4596 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
Tpr3g4596 516 PANTHER PECTINESTERASE 48 514 - -
Tpr3g4596 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 48 514 - -
Tpr3g4596 516 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4596 Tpr-Chr3 51070083 51073767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4596 19 514 Carbohydrate Esterase AT3G43270 60.311 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4596 K01051 - gmx:100814987 708.368