Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4586 ATGGCGGAATCTCGCCCACCTAAGCGCCACAAAATTAGCAGGGGTGATGATGATTATATGCCTGGAAACATTCTAGAGATCGAGCTTCATAATTTCATGACATTTGATTACTTAAAATGTAAACCTGGGCCTCGGTTGAATCTCGTAATTGGGCCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTGGGCCTATGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACGAGTGTCGGGGCATATGTGAAGAGGGGAGAAGAGTCTGGGCACGTTAAGATTACCTTAAGAGGAGACCAGAAAGAAGAGAACATTACGATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTCAATGGAAACATTGTGGCCAAAAAGGATGTGGCGGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCACAAGATAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGTGCACTCATCGATAAAAGTCGTACATTAAAGCATGTTGAACTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAGTTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATATCGTGAAGCTAAAAAACGTGAGAAGATTGCAGCAAAGGAGTTTCAGAAAGCTGCAAAATTATTAAATGAACTTAAAGAGCCTATTAATAAACAAAAGGATGAGAAGGCTACATTAGAAGCAAAATGCAAAAAGGTTAATAACCGAATAGACGAGAATGCCAAGAAGAGAATGGATCTTAAGGAGAAAGAGAACCGATTGGAAGTGGAATTACAAGGAAAGTACAAAGAGATGGACGAGTTGAAGAGGCAGGAAGAAACTCGGCAACAGAAATTTATCAATGCTAGGGAGGAACTTGCTGCTGCTGAACTTGAACTTAAGAATCTAGACCCTTTTCTACATCCCAAGGATGAGCTTGCAAGACTGAGAGAGGAAACTCTGGAGTTGGATGGTTTTGCTACTCAAGCGAGAGAAAATAAGTCACAAACAGAAAACGAAATAAAGGTTAAAAGGTCCTCCTTGGAAAGGTGTCAAGACAGGTTGAAAGAAATGGGTAATAAAAGTACCAATTGTTTGCATGCATTAAAAAGATCTGGGGTTGAAAAAATTGTTGATGCTTATGATTGGGTCAAAGCGCATCGCCATGAATTTAACAAGGAAGTTTATGGTCCAGTATTACTAGAGGTGAATGTCCCAGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACACTTGGAAGTCTTTCATAACACAGGATCCTCGTGATCGGGATTTTTTGGTGAACAACCTACGGAATTTCGATGTACCAGTTTTAAATTACACTCGTGATAGCCGACAAAGAGAGCCGCCTCCTGAAATATCTCCCGATATGCGTGCTCTTGGTGTCTACTCCCGTTTGGACCAAATTTTTGATGCTCCTTTTGCTGTCAAGGAGGTTTTGAATAGCCAATCTAATCTTGATCGTTCATTCATTGGATCGAAAGAAACTGATCAGAAAGCTGATGGGGTCCCAAAATTAGGAATTACTAGTTTATGGACACCAGAAAACCACTATCACTGGTCTATGTCTAGATATGGAAATCATGTCTCAGCAATTGTGGAACAAGTGCAACGCCCAAAACTTTTACTGAATAATTTGAATGTGAGGGACATTGAGGATCTGAAGTCCCAGGAAAGGGATCTTAAAGAACAAATTGCTTCCTCGGAGGAAAGTGTCAAACGGTTTAAAGACGAGGAAAGAAGCTTTATGAATCAGGCTGCTAATCTTCGTAAACAGAGTGAAGCCATTCGTAGGGAAGCACAAATAAAGAAACAAGAGCGAGAAGCAATAAATAGGCGTATTGAACAAAAGAAAGCAAAACTGAAATTGATGGAGGAGCAAGATGATTTGGACACTGAGTTAGCAAAGCTTGCTGATCAGGCAACAGAATGTAACATTCAGCGTTTCCATAATGCAATTAAAATTAAGGATCTTCTTGTTGAAGCTGCGGGTTACAGACGAAATTATGTTGAACAACGTATGACTTGCATTGAATTTGATGCAAAGATTAAAGAAGTGGAGGCCAATATCAAGCAGCATGAAGATTTAGCTCTGCAGGCATCATTGCAATTTAACAACGCTAAGAAAGAGGCTGAAGAATGTAGACAGAACCTTACAGATTTATTGAACTATGCTAAGTCAATTGCTCGGCTTACACCTAATCTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGATACAACTTCTCAAGCCAATTCAATCCTTTTTGTCAATTCTAACATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAACTAAACTTGATGCAGACAAGAAGGAATATGAAAGGTGTAAAGCCGAACTTGAGAACATTAAGGGAAAATGGCTCCCAACACTGAGAAACCTTGTGGCCAAGATAAATGAAACTTTTAGTCAAAATTTTCGACAGATGGCTGTTGCCGGAGAAGTTTCATTAGATGAGCATGATATAGACTTTGATCAATATGGAATACATATAAAAGTCAAATTCAGAGAAAATGGAGAGCTTGAAGTTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAATCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTGGTGAGAGCAGCAAGCAAGCCAAATACACCACAGTGTTTCTTGCTTACCCCAAAGTTGTTACCAGATCTCCAATATAGTGAGGCTTGTAGCATATTGAATGTAATGAATGGCCCTTGGATTGAACAACCCTCAAAGGTCTGGACTACTGGTGATCGATGGAGTACTATCACTGGGCATGTTGGAGAGACCCGATGTTAA 3159 0.4011 MAESRPPKRHKISRGDDDYMPGNILEIELHNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSVGAYVKRGEESGHVKITLRGDQKEENITIMRKINTSNKSEWFFNGNIVAKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRTLKHVELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREAKKREKIAAKEFQKAAKLLNELKEPINKQKDEKATLEAKCKKVNNRIDENAKKRMDLKEKENRLEVELQGKYKEMDELKRQEETRQQKFINAREELAAAELELKNLDPFLHPKDELARLREETLELDGFATQARENKSQTENEIKVKRSSLERCQDRLKEMGNKSTNCLHALKRSGVEKIVDAYDWVKAHRHEFNKEVYGPVLLEVNVPDQSHAGYLEGQVAWYTWKSFITQDPRDRDFLVNNLRNFDVPVLNYTRDSRQREPPPEISPDMRALGVYSRLDQIFDAPFAVKEVLNSQSNLDRSFIGSKETDQKADGVPKLGITSLWTPENHYHWSMSRYGNHVSAIVEQVQRPKLLLNNLNVRDIEDLKSQERDLKEQIASSEESVKRFKDEERSFMNQAANLRKQSEAIRREAQIKKQEREAINRRIEQKKAKLKLMEEQDDLDTELAKLADQATECNIQRFHNAIKIKDLLVEAAGYRRNYVEQRMTCIEFDAKIKEVEANIKQHEDLALQASLQFNNAKKEAEECRQNLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQDTTSQANSILFVNSNILEQYEDRQRQIEDLATKLDADKKEYERCKAELENIKGKWLPTLRNLVAKINETFSQNFRQMAVAGEVSLDEHDIDFDQYGIHIKVKFRENGELEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSTITGHVGETRC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4586 1052 Coils Coil 841 878 - -
Tpr3g4586 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 274 IPR027417 -
Tpr3g4586 1052 Gene3D - 847 1011 IPR027417 -
Tpr3g4586 1052 Coils Coil 746 787 - -
Tpr3g4586 1052 CDD ABC_SMC5_euk 925 1027 - -
Tpr3g4586 1052 Coils Coil 621 710 - -
Tpr3g4586 1052 Coils Coil 275 351 - -
Tpr3g4586 1052 Coils Coil 194 235 - -
Tpr3g4586 1052 Coils Coil 393 413 - -
Tpr3g4586 1052 Gene3D - 23 227 IPR027417 -
Tpr3g4586 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1003 IPR027417 -
Tpr3g4586 1052 CDD ABC_SMC5_euk 22 179 - -
Tpr3g4586 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Tpr3g4586 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1050 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4586 Tpr-Chr3 50972223 50988074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4586 1 1043 Structural Maintenance of Chromosomes family AT5G15920 61.553 0.0 1285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4586 K22803 - gmx:100778678 1614.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4586 3 50972223 50988074 Tpr3g4586 3 50972223 50988074 ECH