Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4563 ATGGATGAATATCGGTGTAAGGCATGGCTACGTTTGTGTGATTCCAGCACACAGAGTATTTCAGGTGATGGCAACAAATTTTTCAAGGTTCAATTTGTTTACAAAACTACATATGTTCCAACTGATACGTCTCAATCTTCGTTCGAAGACATCCAATGTCACGCTCTTCATAACATCTCAATGGATAAGATGATGGATGAAAATACCTTCGTGTCATGGCTTTCTCAAGTAAATGTTCCTCAAGATGCTTTCACAATGGTGGTAGAAGCAATTATGCAATGTGCTTCTGATATAGTTGATGATGAGACTTATAAGAACCTAAAGTTTCTTACTATTCGAGTCGATTTTTCTGTTAAAAGGGCTATTGAATATGTTGATTGTGAAGAAGAAGAAGAAGAGGAGAACAATAGTTTGGAAGAGGATGTCGAGATAATAGATGTTGAAGAAGAAGAAGATAATGGGTTGGTTGATGATGTTACAATTATTGAAATTGAAAGTGATGAAGATGAACACGGTTTGGAAGAGGATGAAGAAGAGCCAATGATGCTTGAAGAAGAAGCTGCTAGGTTTATACCTGCTAACGAATATCATTGTAAGGCATGGCTACGTAAGTCCGATTCCAACACACAACGTATTTCATGTGATGATAAGAAGTATTTCGACATTCAATTCGAATACAAAACTAGGCATGTTTCGACAGATATGTTTCAATCTTCTGTTGAACACATTCAACGTGATGCTCTTCGCAACATCTCAATGGATAAGATGATGGATGAAAATACCTTTGTGTCATGGCTTTCTCTAATAAATGTTCCTCAAGATGCTTTTACATTGGTGATAGAAGAAATCATGCAAGTTGCTTCTGATGCAGTTGATGATGAGCGAAAGCATCTTACTATTCGAGTCGATTTTTCTGTTACAATGGCTATTGAGGATGAGGAAGAAGAAATTATGGTTGAAGAAGAATATACTAGATTTATTCCTGCAGATAAGTCATGTATTGAAGAATTGAAGATGGTAAAAGTAGAAGAAGTAACAAAATGTACTATTTGTCTTGAGGGTGTTAATGTTGGTGTCCCATTACCATGTTCCCACATGTTTCATAAGAACTGTATTGAAGATTGGTTAGTGATAGGTCATTGTTGCCCTTTGTGTAGGTTTGAATTACCTACCAGCAACACTAGAGAATAA 1191 0.3627 MDEYRCKAWLRLCDSSTQSISGDGNKFFKVQFVYKTTYVPTDTSQSSFEDIQCHALHNISMDKMMDENTFVSWLSQVNVPQDAFTMVVEAIMQCASDIVDDETYKNLKFLTIRVDFSVKRAIEYVDCEEEEEEENNSLEEDVEIIDVEEEEDNGLVDDVTIIEIESDEDEHGLEEDEEEPMMLEEEAARFIPANEYHCKAWLRKSDSNTQRISCDDKKYFDIQFEYKTRHVSTDMFQSSVEHIQRDALRNISMDKMMDENTFVSWLSLINVPQDAFTLVIEEIMQVASDAVDDERKHLTIRVDFSVTMAIEDEEEEIMVEEEYTRFIPADKSCIEELKMVKVEEVTKCTICLEGVNVGVPLPCSHMFHKNCIEDWLVIGHCCPLCRFELPTSNTRE* 397
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4563 396 ProSiteProfiles Zinc finger RING-type profile. 348 386 IPR001841 -
Tpr3g4563 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 396 IPR013083 -
Tpr3g4563 396 Pfam Ring finger domain 347 386 IPR001841 -
Tpr3g4563 396 SMART ring_2 348 385 IPR001841 -
Tpr3g4563 396 Coils Coil 128 148 - -
Tpr3g4563 396 SUPERFAMILY RING/U-box 347 391 - -
Tpr3g4563 396 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 193 390 - -
Tpr3g4563 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 193 390 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr3g4563 Tpr-Chr3 50728753 50730020 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4563 314 391 C3H Transcription Factor Family AT5G60820 37.634 6.21e-11 61.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4563 - - cam:101499491 172.94