Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4561 ATGGAAGAATATCGTTGTAAGGCATGGCTAGGTTTGTCCGATTCCAATAGACAAACTATTTCATCTGATGACAACAAGTATTTCAACATTCAATTTGATTACACAACTAGGTATGTTCCAATTAATACAATGTTTCATCAATCTTCTTTTGGAAATTTCCGACAATACACTCTTCGAAACGTCTCGATGGATAACATGATGGATGGAACTACCTTTGTGTCATGGTTTTCTCATATAAATGTTCCTCAAGATGCTTTCACATTGGTGCAAGATGAAATCATGAAAGTCGCTTCTGATATAGTTTTTCATGAGACTTATAAGAATACTATTCGAGTCGATTTTTCTGTTACAAGGGCTTTTGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGAAGAATAGTTTGCAAGAGGATGTGAAGATAATAGATGTTGAAGAAGAAGAAGAAGAAGAAGTTAGAAGGGTTCTTGAATGTGGTGAATATGATTGTAAAGCACGGCTGCTACATTTGACAGATTCCAACACACAAACTATTTCATGTGATGACAACAAGTATTTCAACATTCAATTTTATTACAAAACTATATATGTTTCAACTCTTCAATCTTCTTTCGAAGACATTCGACGCTACACTATGTATAGCGTCTCAATGGATAAAATGATGGATGAAAATACTTTTGTGTCATGGTTTTCTGATATAAATGTTCCTCAAGATGCTTTTAGATTGGTGCTAAAAGAAATCATGCAATCTGCTTCTAGTATAGTTCATGATGAGACTTATAAGAACCTAAAGGTTCTTACTATTCGAGTCGATTTTGCTGTCGCAAAGGCTATTGAAGAAGAAGAGGAAGAAGAAGAAGAGGAGGAAGAAGAAGAGAGTAATAGTTTGGAAGAGGATGTCGAGATAATAGATGTTGAAGAAGAAGAAGAAGATAATGGGTTTGTTGATGATGTTACAAGGGTTATTGAAATTGAAATTGATGAAGGTGATTATGAAGTTGATTATGATTTAGAAGAGGATGAAGAGCTAATGATGTTCGAGGAAGAACATACGAGATTTATTCCTGCAACCAAATCATGTATTGAAGAATTGAAGATGGTAAAAGTAGAAGATGTAACAAAATGTACCATTTGTCTTGAAGATGTTAACATTGGTGTTGCATTGCCATGTTCCCACATATTTCATACGAATTGCATTCGCGATTGGTTGGTGATAGGTCATTGCTGTCCTTTGTGTCGATTTCAGTTGCCAACCAGCAACATGATGAGTGAATAA 1278 0.3498 MEEYRCKAWLGLSDSNRQTISSDDNKYFNIQFDYTTRYVPINTMFHQSSFGNFRQYTLRNVSMDNMMDGTTFVSWFSHINVPQDAFTLVQDEIMKVASDIVFHETYKNTIRVDFSVTRAFEEEEEEEEEEEEKNSLQEDVKIIDVEEEEEEEVRRVLECGEYDCKARLLHLTDSNTQTISCDDNKYFNIQFYYKTIYVSTLQSSFEDIRRYTMYSVSMDKMMDENTFVSWFSDINVPQDAFRLVLKEIMQSASSIVHDETYKNLKVLTIRVDFAVAKAIEEEEEEEEEEEEEESNSLEEDVEIIDVEEEEEDNGFVDDVTRVIEIEIDEGDYEVDYDLEEDEELMMFEEEHTRFIPATKSCIEELKMVKVEDVTKCTICLEDVNIGVALPCSHIFHTNCIRDWLVIGHCCPLCRFQLPTSNMMSE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4561 425 Pfam Ring finger domain 375 414 IPR001841 -
Tpr3g4561 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 419 - -
Tpr3g4561 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 424 IPR013083 -
Tpr3g4561 425 Coils Coil 271 307 - -
Tpr3g4561 425 MobiDBLite consensus disorder prediction 280 302 - -
Tpr3g4561 425 ProSiteProfiles Zinc finger RING-type profile. 376 414 IPR001841 -
Tpr3g4561 425 PANTHER F6A14.12 PROTEIN-RELATED 119 419 - -
Tpr3g4561 425 Coils Coil 118 146 - -
Tpr3g4561 425 SUPERFAMILY RING/U-box 375 419 - -
Tpr3g4561 425 SMART ring_2 376 413 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4561 Tpr-Chr3 50719438 50720980 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4561 322 419 C3H Transcription Factor Family AT5G60820 38.053 2.65e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4561 - - cam:101499491 181.8