Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4553 ATGTATTCACAAAGTTTAGTTCTTTCACTTTTCATCATTTTTGTCTCATTTGGCTTGTGTTTTGGATCTTACTTACAAGAAACAAATCATCAACATTACAATGAGAGGATGATGAAGAAAGCTCATCATCGATCTATCACACCTTCGCGGTCTCAAAATACGGTTAATGTAAAGAACTATGGAGCCATAGCTAACGATGGACGAGTTGATAATGAGGCATTTGAAAAGGCATGGGATAAGGCATGTTCTGAAGGGGCTACTCTTGTGGTACCTGAAAATAGTGTCTATCATCTAAAGCCTATAATATTTTCAGGTCCATGCCAACCCAAAACTGCATTTAAGATTTATGGAACAATAAAAGCATGGCCTAAAAGATCAGCATATGGAGAAGATACAAGGCTATGGATTAAGTTTGATAATCTCACAAATTTTAAAGTTGATGGTGGTGGAACCATAAATGGCAATGGAAAAATTTGGTGGAAGAATTCTTGCAAAGTCAATGAAAGCCTTCCATGCATAGGAGCACCAACTGCTGTGACTTTCAGTGATTGCAACAACTTGAAAGTGGTTAACCTAAGGTTCAAAAATGCACAACAAATGCATGTAGTGATTCAAAGTTGCAACAATGTTTTGGCTTCAAAGTTAATAGTCAGAGCACCAGGGCACAGCCCCAATACTGATGGAATTCATGTCACCCATTCACAAAATGTTGTCATAAGTAACTGCATCATTGGGACAGGTGATGATTGCATTTCAATTGTAAGTGGGTCCAAAAATATTCGTGCTACAGATATCATTTGTGGACCAGGACATGGAATAAGTATTGGAAGCTTAGGAAAAGGTAACTCAGAAGCTGAAGTGACCAATGTGGAAGTGAATAGAGCCACACTAAAAGGAACCACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCAAAAAACATCAAATTTCACAACATAGTTATGCGAAATGTGACAAATCCCATTATCATAGATCAAAACTATTGTGACCAAAAAGAGGAATGTCAAGAGAAGGACTCAGCAGTGCAAGTAAGCAACATTTTGTACCAAAACATAAAAGGAACAAGTGCCTCAGAAGTGGCAATCAAACTTGAATGCAGCAAAGCTATCCCATGCAAAGGAATTCACTTGCAAGATGTGATTTTAACACCAGAAGACAATGATCACACCATTGCAAAATGTGACAATGTTAGATATTCACACAGTGGAATGTTAAATCCTAAATGCCATCCATGA 1269 0.3783 MYSQSLVLSLFIIFVSFGLCFGSYLQETNHQHYNERMMKKAHHRSITPSRSQNTVNVKNYGAIANDGRVDNEAFEKAWDKACSEGATLVVPENSVYHLKPIIFSGPCQPKTAFKIYGTIKAWPKRSAYGEDTRLWIKFDNLTNFKVDGGGTINGNGKIWWKNSCKVNESLPCIGAPTAVTFSDCNNLKVVNLRFKNAQQMHVVIQSCNNVLASKLIVRAPGHSPNTDGIHVTHSQNVVISNCIIGTGDDCISIVSGSKNIRATDIICGPGHGISIGSLGKGNSEAEVTNVEVNRATLKGTTNGVRIKTWQGGSGYAKNIKFHNIVMRNVTNPIIIDQNYCDQKEECQEKDSAVQVSNILYQNIKGTSASEVAIKLECSKAIPCKGIHLQDVILTPEDNDHTIAKCDNVRYSHSGMLNPKCHP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4553 422 Gene3D - 38 420 IPR012334 -
Tpr3g4553 422 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Tpr3g4553 422 PANTHER - 24 421 - -
Tpr3g4553 422 Pfam Glycosyl hydrolases family 28 86 412 IPR000743 GO:0004650|GO:0005975
Tpr3g4553 422 SUPERFAMILY Pectin lyase-like 44 421 IPR011050 -
Tpr3g4553 422 SMART pbh1 234 255 IPR006626 -
Tpr3g4553 422 SMART pbh1 316 337 IPR006626 -
Tpr3g4553 422 SMART pbh1 207 233 IPR006626 -
Tpr3g4553 422 SMART pbh1 257 277 IPR006626 -
Tpr3g4553 422 SMART pbh1 287 308 IPR006626 -
Tpr3g4553 422 PANTHER POLYGALACTURONASE 24 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4553 Tpr-Chr3 50675713 50681463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4553 1 420 Glycoside Hydrolase AT3G07970 53.515 3.46e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4553 K01184 - gmx:100796446 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4553 3 50675713 50681463 Tpr3g4553 3 50675713 50681463 ECH
Tpr4g1280 4 12385658 12390026 Tpr3g4553 3 50675713 50681463 PCT
Tpr7g1651 7 18811138 18813077 Tpr3g4553 3 50675713 50681463 PCT