Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4540 ATGGTTACCATTAAAAGTTCTTACACTGTGATTCCAGAAGAACCAACACCCCAAGGCCGTTTATGGCTCTCTGACAAAGATCAAGTAGCAACTCAACATCACACACCCACCATTTACATTTACAAACCAAATCAGAACCAAGAAAATGTCATAGAAACACTGAAAAACTCTCTAAGCAAAATTCTAGTTCACTACTATCCTATAGCTGGTAGATTGTGTTACTCAGATGAAGAAGTTGATAGTTGTAGAGTTGAATTGAATCTCAATGCCAAAGGAGCCATTTTGCTTGAAGCTGAAACCACAAAAACAATTCATGATTATGGTGACTTTTCACCTTCTGATTCAACCAAAGAGCTTATTCCAATAATCGATTACAATCAACCCTTTCAAGAAATGCCACTTCTTGTTGTGCAAGTCACAAGTTTCAAAAATAACCAAGGCTTTGCAATTGGTGTTGCTTTATCCCACTCTTTAACAGATGGAATTGGAGCTGGTGGATTCATCACCTCATGGGCGAAAATATCACGCGGCGAAACACTAGAACCTAATGAATTACCCTTTCTTGATAGAACAATAATAAAATTTTCACACACACCATCGAAAGTACCGCGTTTTGAGCACTTGGAATTGAAGCCTCTTCCACTCATTATAGGAAGAAAAGACACAAGTGAAGAAAGAAAGAAGAAAACGACAGCAACATTATTGAAACTCTCACCTGAACATGTTGAGAAATTGAAGAAAAAAGCTAATGATTTTTTATCAATGAAGAAAAAAGAAGGGTCAAGACCTTTTAGTAAATTTGAAGCAATTGGTGCACATCTATGGAGATGTGCATCTAAGGCGCGCGAGCTTGAAGACGATCAAGAAAGCGTTGTTAGATTTCATGCTGATATTAGAAAAAGAATTATTCCACCACTTCCTCAAAACTTTTTTGGTAATGCTTTGGCATTAACTGCAACAAAAGGATATATTGGAGAAATCACATCAAAGCCTTTAGGCTATGTAGCACAAAAGATAAGGGAAGCATCTGAGTTAGTTAAAGATGATTTTATAAAGTCACAAATTGATGTTATTAGAAGTTTTAGAAAAGTGGAAGATGCAACGAATTTGTTTCTTGGTGATGAAACTGAAAAAGCACCATATTTTGGGAATCCAAATTTTCAAGTAGCTAGTTGGACAGGAATGCCATTTCATGAAGTTGATTTTGGATGGGGGAAGCCTATTCACTTTGGATATGCTGGTGTGTCTCCACATGATAGGGCATACATTACTCTTAGTCCTGATGGAGATGGTTCTGTTATTGTGTCTTTGCATTTTCAGATTGCACATTTGGAGCTTTTCAAAAAGTTCTTCTATGAGGATATATGA 1368 0.3662 MVTIKSSYTVIPEEPTPQGRLWLSDKDQVATQHHTPTIYIYKPNQNQENVIETLKNSLSKILVHYYPIAGRLCYSDEEVDSCRVELNLNAKGAILLEAETTKTIHDYGDFSPSDSTKELIPIIDYNQPFQEMPLLVVQVTSFKNNQGFAIGVALSHSLTDGIGAGGFITSWAKISRGETLEPNELPFLDRTIIKFSHTPSKVPRFEHLELKPLPLIIGRKDTSEERKKKTTATLLKLSPEHVEKLKKKANDFLSMKKKEGSRPFSKFEAIGAHLWRCASKARELEDDQESVVRFHADIRKRIIPPLPQNFFGNALALTATKGYIGEITSKPLGYVAQKIREASELVKDDFIKSQIDVIRSFRKVEDATNLFLGDETEKAPYFGNPNFQVASWTGMPFHEVDFGWGKPIHFGYAGVSPHDRAYITLSPDGDGSVIVSLHFQIAHLELFKKFFYEDI* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4540 455 Gene3D - 1 212 IPR023213 -
Tpr3g4540 455 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 455 - -
Tpr3g4540 455 Pfam Transferase family 1 453 - -
Tpr3g4540 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 455 - -
Tpr3g4540 455 Gene3D - 218 454 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4540 Tpr-Chr3 50569581 50571311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4540 2 453 Monolignol Biosynthesis Gene Families AT5G48930 33.700 1.74e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4540 K13065 - gmx:100778626 551.977