Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4531 ATGTATGTGCCATGTGTCGTGTATCCATTGAAAAAAATACTACAGTCACAAAAACACACACGAAACAAACCCCATCTCCCTCCGCCACTCTCGACCAACCAACTGCCATTTGAGAACAGTTGTCAACTCCGACCACCGCAATCACACCGTCGTTCCCAACTTGTCATGGCAGCACTGCGAGACATTTCTGCAACCTTGCTTTCTCGCTCCAAACCCCACACTTCTCTTTTTCAATGTCTCTTCCTTCGTAGAAAGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGAGAAATTAGCCGAAGCTTTTTCTCAATACGGAAATGTTCTGAAAGCTGATGTCGTATTGAATAAAGCCAAGAATAGATCGAAAGGTTTTGGATATGTGACTTTTGCTGAGGAGGAAGGAGCCCACAAGGCACAGATTGGCATGAATGGAAAGATATTACACGGACGTGTCTTATATGTAGACATAGATCCACCTAACAAGGAGAAGAAAACTTAG 516 0.4244 MYVPCVVYPLKKILQSQKHTRNKPHLPPPLSTNQLPFENSCQLRPPQSHRRSQLVMAALRDISATLLSRSKPHTSLFQCLFLRRKTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADVVLNKAKNRSKGFGYVTFAEEEGAHKAQIGMNGKILHGRVLYVDIDPPNKEKKT* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4531 171 Gene3D - 48 171 IPR012677 -
Tpr3g4531 171 PANTHER RNA RECOGNITION MOTIF 65 164 - -
Tpr3g4531 171 SUPERFAMILY RNA-binding domain, RBD 85 168 IPR035979 GO:0003676
Tpr3g4531 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 158 IPR000504 GO:0003723
Tpr3g4531 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
Tpr3g4531 171 SMART rrm1_1 88 161 IPR000504 GO:0003723
Tpr3g4531 171 PANTHER TRANSFORMER-2-RELATED 65 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4531 Tpr-Chr3 50460385 50462747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4531 81 160 Eukaryotic Initiation Factors Gene Family AT1G22760 38.750 5.54e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4531 - K13195 gmx:100527061 159.458