Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4526 ATGCAAATGAGGAAACCTGATTTGATCATGGCAAAAGAAAACAACAAAATGAACAATAATGTTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGATAAGGTATATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCAGGTCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACCTGAGACCCGATCTTAAACGCGGTGCATTTTCGCCTCAAGAGGAAGAACTCATCATTCATTTCCACTCTATTCTTGGCAACAGATGGTCTCAGATTGCAGCACGTCTCCCTGGTCGCACCGATAATGAAATAAAGAATTTTTGGAATTCTACATTGAAGAAGAGATTGAAAACCAACAATAACTCCACTCCATCCCCAAACAATAGTGACTCATCAGATCAACCCATATTAGATGTTTTTGATATGAAAAATAATGTGATCATGCCAATTAATGAGCAAGAACTCATGACATTGTGCATGGACTCCTCATCTTCAACTTCATCATCATCCATGCAATCCATGCACATGCATGCTATGGTTTTAGCTGATCAATTTGATCCATTTTCCTTGTTGTCTACTAATACTCGTTATGACATGACAACAAGTTTCCATGATCATGACATGCCAACAAGCTTAACACAACAAGTTGGAATGGTTAATGATATTGGGCTTAGTGATGATTATGGGATTTTAGATGCTAACAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATTGAAAACAAGACTGCACCAATTGATCATAATGGGAAAAACCATATCAACCACTTCAATAATAGTTGCTTCAATAATACTAATCACATTCAAAATTCCAATGTAGAGGACTTGTTTGGGTTTGGAAATCATGGGCAAGGGGAAAATTTAAGAATGGGAGAATGGGACTTAGAGGGTTTAATGCAAGACATATCCTATTTACCTCCCCTTGATTTTCAAGTTTAA 1026 0.3723 MQMRKPDLIMAKENNKMNNNVNKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNSTPSPNNSDSSDQPILDVFDMKNNVIMPINEQELMTLCMDSSSSTSSSSMQSMHMHAMVLADQFDPFSLLSTNTRYDMTTSFHDHDMPTSLTQQVGMVNDIGLSDDYGILDANKMGLLENDFELPPLESRISIENKTAPIDHNGKNHINHFNNSCFNNTNHIQNSNVEDLFGFGNHGQGENLRMGEWDLEGLMQDISYLPPLDFQV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4526 341 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Tpr3g4526 341 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Tpr3g4526 341 Gene3D - 25 81 - -
Tpr3g4526 341 PANTHER TRANSCRIPTION FACTOR MYB83 3 341 - -
Tpr3g4526 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Tpr3g4526 341 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Tpr3g4526 341 Pfam Myb-like DNA-binding domain 81 125 IPR001005 -
Tpr3g4526 341 CDD SANT 83 126 IPR001005 -
Tpr3g4526 341 PANTHER MYB DOMAIN PROTEIN 55 3 341 - -
Tpr3g4526 341 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Tpr3g4526 341 SMART sant 80 128 IPR001005 -
Tpr3g4526 341 SMART sant 27 77 IPR001005 -
Tpr3g4526 341 CDD SANT 31 75 IPR001005 -
Tpr3g4526 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Tpr3g4526 341 Gene3D - 82 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4526 Tpr-Chr3 50408586 50412159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4526 1 341 MYB Transcription Factor Family AT3G08500 47.297 3.74e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4526 Myb_DNA-binding 5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4526 K09422 - gmx:100813660 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4526 3 50408586 50412159 Tpr3g4526 3 50408586 50412159 ECH