Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4515 ATGTCCACAAGGGTTTGCAAGTTCTATGCCAGAGGGATATGTTTGAAAGGGGACCAATGTGATTTTGCTCATCAAAGAAAGGATATTCCAGTTGATGTTTGCTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCTGCGTCTATGGTTTCAGATTCTGCTAAAGTAACTTCAAATTGGGTTCCTAAGGTTACTAAGGCTCCTGCACCTGACAAGCGTGGCGTAAAGAGTTTACAACGCAAGCATCAGGACTCTAGTGATGTTGGTGAATCCAGTACTGCGAGTGCTAAGCCGCATGATATATTTTGTACATATGCTGCGGCCAACTGCCCCTTGGGAGATGGATGTTCTCGTGTTCATGGAAATCAATGCTTATACTGTAGAAAATATTGCTTGCATCCGACTGATAAAAAGGAAAAGGAGAGTCATTTGAGGACTTGTGACAAAAAGGAAAAGTACCTTCTGGCTTTGAAAAATAGCGAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTCCTTTCCAAACCCAAACCATCAGATTGTAAGTTTGGGTTGCTTCCAGAATGCGATCATGCTTTCTGCTTGTCATGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGAAATCAGCAGTAATTCCAATACTGTGAGAACCTGTCCTGTTTGCCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTTTACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGAAATGGGAATTGTCCATTTGGAGCTGGTTGTTTCTACAAGCATACAGTGAAGCCTGGGTCATACACATGGGTACACCGCAGGCCACCACCTCAACGTAGACCAAACCATTATGATATGTATGATGTGTTGGATATGCTCAGTGAAGTTGATTTATCAAGTGGAGAATTTTATAACATCATGAGAGACTCCGAGTTTTTTGATGGGATGGATCCATTTGAAATGATGGCTTTGTCAGATTCGCTGGCTGGTGGTTCGGGTCCTTGTTTGAATCCTTTTGATTCTGACGATGAGGAAAATGAATTTGATGTTTTTCGAATGGCTGCTATGTCAGAGGCCCTGGCTTCTGGGGTAGATGATTTTGGCCCTGATGATTTTGAGGATGAATTTGATCCTATGGAGGCAGCCTTGTTATCAATGATAATGCATTCTCATATGGAAGACGACAATGAAGACGATGAAGAAGAATACAGTGACGATGAATATTAG 1332 0.4137 MSTRVCKFYARGICLKGDQCDFAHQRKDIPVDVCSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAKVTSNWVPKVTKAPAPDKRGVKSLQRKHQDSSDVGESSTASAKPHDIFCTYAAANCPLGDGCSRVHGNQCLYCRKYCLHPTDKKEKESHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSDCKFGLLPECDHAFCLSCIRNWRNSAPTSGMEISSNSNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGAGCFYKHTVKPGSYTWVHRRPPPQRRPNHYDMYDVLDMLSEVDLSSGEFYNIMRDSEFFDGMDPFEMMALSDSLAGGSGPCLNPFDSDDEENEFDVFRMAAMSEALASGVDDFGPDDFEDEFDPMEAALLSMIMHSHMEDDNEDDEEEYSDDEY* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4515 443 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Tpr3g4515 443 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Tpr3g4515 443 CDD RING-HC_MKRN 180 241 - -
Tpr3g4515 443 SMART ring_2 180 240 IPR001841 -
Tpr3g4515 443 Pfam Zinc finger, C3HC4 type (RING finger) 180 240 IPR018957 GO:0046872
Tpr3g4515 443 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Tpr3g4515 443 MobiDBLite consensus disorder prediction 76 110 - -
Tpr3g4515 443 PANTHER MAKORIN-RELATED 1 443 IPR045072 -
Tpr3g4515 443 SUPERFAMILY RING/U-box 170 247 - -
Tpr3g4515 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 252 IPR013083 -
Tpr3g4515 443 SMART c3hfinal6 112 137 IPR000571 GO:0046872
Tpr3g4515 443 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Tpr3g4515 443 SMART c3hfinal6 270 298 IPR000571 GO:0046872
Tpr3g4515 443 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Tpr3g4515 443 ProSiteProfiles Zinc finger C3H1-type profile. 270 299 IPR000571 GO:0046872
Tpr3g4515 443 Gene3D - 1 69 - -
Tpr3g4515 443 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Tpr3g4515 443 MobiDBLite consensus disorder prediction 423 443 - -
Tpr3g4515 443 MobiDBLite consensus disorder prediction 429 443 - -
Tpr3g4515 443 SUPERFAMILY CCCH zinc finger 30 52 IPR036855 GO:0046872
Tpr3g4515 443 MobiDBLite consensus disorder prediction 84 102 - -
Tpr3g4515 443 Pfam RNA-binding, Nab2-type zinc finger 275 296 - -
Tpr3g4515 443 Pfam RNA-binding, Nab2-type zinc finger 118 136 - -
Tpr3g4515 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 24 IPR000571 GO:0046872
Tpr3g4515 443 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Tpr3g4515 443 ProSiteProfiles Zinc finger RING-type profile. 180 241 IPR001841 -
Tpr3g4515 443 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4515 Tpr-Chr3 50299924 50305457 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g4515 zf-C3HC4 4.9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4515 K15687 - gmx:100788886 648.662