Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4512 ATGGCTCAGAGAACAGAAAACGAAGAAACAGAATTCAAACTTGTACCAAAATCAATAACACTTTGTATCAACAACTGTGGCGAAATCGGTAACGTTTCAACAAACAACATGTGTCAAAATTGTTTCACGGCGTCAACGGCAACAACCTTCGGAATCGGAAACGGAGTTTCATCTTCATCTCAATCTTCCATGTCTATTCGTTCTCTGAAGAGATCTTTTCAAGAGGAATCATCACCGATTGTTACGGATCGGAGTTTGTTAGATCAAGCGATGTTTTCTGAAGCGAAGCGTGTTGTAAGTCGTTGCTCTGGTTGCCGGAAAAAGGTAGGGTTGACCGGATTCCGATGTAGATGCGGTGATCTTTTCTGTTCGGAACATAGGTACTCCGATCGTCATGATTGTAGCTATGATTATAAAGCTGCTGGAAGAGAAGCGATTGCGAAGGAGAATCCTGTTATCAGAGCTGCGAAAATCGTTAAGGTCTGA 486 0.4239 MAQRTENEETEFKLVPKSITLCINNCGEIGNVSTNNMCQNCFTASTATTFGIGNGVSSSSQSSMSIRSLKRSFQEESSPIVTDRSLLDQAMFSEAKRVVSRCSGCRKKVGLTGFRCRCGDLFCSEHRYSDRHDCSYDYKAAGREAIAKENPVIRAAKIVKV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4512 161 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677|GO:0008270
Tpr3g4512 161 Pfam A20-like zinc finger 21 42 IPR002653 GO:0003677|GO:0008270
Tpr3g4512 161 Gene3D - 77 157 IPR035896 -
Tpr3g4512 161 SUPERFAMILY AN1-like Zinc finger 91 155 IPR035896 -
Tpr3g4512 161 ProSiteProfiles Zinc finger AN1-type profile. 96 142 IPR000058 GO:0008270
Tpr3g4512 161 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 1 161 - -
Tpr3g4512 161 Pfam AN1-like Zinc finger 102 139 IPR000058 GO:0008270
Tpr3g4512 161 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 161 - -
Tpr3g4512 161 Gene3D - 1 76 - -
Tpr3g4512 161 SMART AN1_Zf_4 102 139 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4512 Tpr-Chr3 50279701 50280812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4512 16 161 C2H2 Transcription Factor Family AT3G52800 39.877 3.27e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4512 - - gmx:100787293 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4512 3 50279701 50280812 Tpr7g1713 7 19667189 19668082 ECH
Tpr3g4512 3 50279701 50280812 Tpr3g4512 3 50279701 50280812 ECH