Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4507 ATGAGTATTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAATATTATTCATTCCAAACAACACTATCATCAACAACATAATTCTGGTCTCCTTATGAGGTACAATTCAGCTCCAACATCATTGCTTACAAGTCTTATTGACATCAACACTCAAAGCTATCTAAACAATGAAGAATCTTTTACAAGTGAGAGTTCAAGTTCAGAAATGGATACTATGTTTTCTAAGTTGATATCATCCAACAATTTATGGAACAATTCTGAAGAACCTTTACAAGAGTTTGATGTGAAGCCTGTGAAGCAAGAAATAGGTGAATCTGTTCCACAAAATGGTGATTATTCTTATGGTGGATCTGAGTTGATTTACCAAGGCTTTTCAAATGGTTCTAGTAATGGATTTTATGGATCTTTTGATGGAGTTAACTCTAAAATTGGTGTGAGGAATTCTTCTTCCAATCTAATTAGGCAAAAAAGCTCACCTGCTGGATTTTTCTCTAATGAAAATGTTGAAGATCTTGCAACATTGAGAGAGTTAGGAAGTTTTAAAGCCAACGAAGTCTCTGGTACACTTAACTTCTCATCTAGGCCAAGGATGCCACAAATAGCTGAAAATGGAGTCCAAAGCATAGAAGCAAATTGTGACCAAACAACAAACCTAGTTAATGAAAATGGTAACTCCAAACGTCACATTCCAAGCTTCACCAATGAGTTTTGGGACAATTCTGCATTCAATGCTCAAAAAACAGAAATTGAAGATGAAATAATGTTTTCTACTTCAAATGGTATGGAATCTCAAGAAGCAGAATTTTGTTATCAAAATCTTGGATTGACTCATCATTTGAGTTTGCCTAGTTCATCTACAAAGATACCATCATCCATGGAGAAGTTTCTTCAAGTTCAAGGATCAGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTTTGCAACTCATCCAAGAAGCATTGCAGAGAGGGTAAGAAGAATGCGAATAAGTGAAAGAATCAAGAAACTGGAAAGTCTGTTCCCAAAATCCGACAAGCAAACAAGCACAGCAGATATGCTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAAGAACAAGTTCAGATACTCACAGTTCGTAAGGAAAAATGCAAATGTACAAGTCATGAAAAGCAACACTCTAGACAATGCAGCTGA 1185 0.3578 MSIMYEELRRNQEMDSSNIIHSKQHYHQQHNSGLLMRYNSAPTSLLTSLIDINTQSYLNNEESFTSESSSSEMDTMFSKLISSNNLWNNSEEPLQEFDVKPVKQEIGESVPQNGDYSYGGSELIYQGFSNGSSNGFYGSFDGVNSKIGVRNSSSNLIRQKSSPAGFFSNENVEDLATLRELGSFKANEVSGTLNFSSRPRMPQIAENGVQSIEANCDQTTNLVNENGNSKRHIPSFTNEFWDNSAFNAQKTEIEDEIMFSTSNGMESQEAEFCYQNLGLTHHLSLPSSSTKIPSSMEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRMRISERIKKLESLFPKSDKQTSTADMLDLAVEYIKDLQEQVQILTVRKEKCKCTSHEKQHSRQCS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4507 394 Pfam Helix-loop-helix DNA-binding domain 322 367 IPR011598 GO:0046983
Tpr3g4507 394 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 24 386 - -
Tpr3g4507 394 SMART finulus 322 372 IPR011598 GO:0046983
Tpr3g4507 394 Coils Coil 363 383 - -
Tpr3g4507 394 Gene3D - 318 392 IPR036638 GO:0046983
Tpr3g4507 394 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 386 - -
Tpr3g4507 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Tpr3g4507 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 383 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4507 Tpr-Chr3 50216713 50219505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4507 14 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.704 3.02e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g4507 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4507 - - gmx:100812802 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4507 3 50216713 50219505 Tpr7g1717 7 19728380 19732742 ECH
Tpr3g4507 3 50216713 50219505 Tpr3g4507 3 50216713 50219505 ECH