Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4504 ATGAGTATGAAAAAACAGAGTTTGTTTGATCATAATGCTGGGAGAAGCCAAGAGCTTCAATGTGGTTCTAAGAACAACCCAAAAATGTGTGCCATAGTAAGAAAATACATCCCTAATCCAGACAGATCTCATGTTCTTGAGATCACTACTGGATTTGATGTATCGAAAAGTCTATTTGATTACATTTACCGTAAAGGGAGGGGCATCACCATCCTCAGTGGAAATGGAGAGGTGGCTAATGTCACCCTTCGTCTACCCACAGGAAGAATTGAAACCTTTATGGGAAGGTTCAATATTCTTTCAATATCTGGGACAATTTACCCACCGATGACACCAGTAAGTGCGAGAGGATTAGAAGTTGTCTTAGTAAGCACTACAGGAGAAATGATTGGGGGTAGTGTTATGCCCCCTCTAGTGGCTTCAGGTCCAGTGGTGTTGGTGGTCCTTTCCTTTGCAAATAGTGCAGATGGACAGGTGGAAGGTGATGCTGACTTGTTCAATGTTGGAGGATCAACACCTGGAATGAGTAGCGTCATCAAATGTCCCTTATTCTCCCGTCTCTAG 564 0.4309 MSMKKQSLFDHNAGRSQELQCGSKNNPKMCAIVRKYIPNPDRSHVLEITTGFDVSKSLFDYIYRKGRGITILSGNGEVANVTLRLPTGRIETFMGRFNILSISGTIYPPMTPVSARGLEVVLVSTTGEMIGGSVMPPLVASGPVVLVVLSFANSADGQVEGDADLFNVGGSTPGMSSVIKCPLFSRL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4504 187 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 154 IPR014476 GO:0003680
Tpr3g4504 187 CDD DUF296 42 151 IPR005175 -
Tpr3g4504 187 Pfam Plants and Prokaryotes Conserved (PCC) domain 42 152 IPR005175 -
Tpr3g4504 187 SUPERFAMILY AF0104/ALDC/Ptd012-like 40 154 - -
Tpr3g4504 187 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 21 154 - -
Tpr3g4504 187 ProSiteProfiles PPC domain profile profile. 38 174 IPR005175 -
Tpr3g4504 187 Gene3D - 41 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4504 Tpr-Chr3 50179849 50180412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4504 22 154 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 48.611 9.55e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4504 - - mnt:21407524 146.362