Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4503 ATGAGCACCACTTCAGGTGGTGACGATGGCCGCAAAGCGCTAAAGGGTAAGAAGATGATGTCATTGTCAAGTGGGGATGATAGTCAAATGCTAAAGCATAATCGGCCATCATCATCAAGTGGAGATGTTGACTGCAAGAGAATAAAGCGTAGTGAGTCGGCATTACTAGGCGAAGAAGATGATCAAGGACGTAACGTGGAAGGAGAAGGTATATTGAGAGGCATGACTAGCACTTCAAGTGTAGATAATGGTCACAAAAAGATAAAGCGTAGTTGGTCATCATCATCAAGTTTGGATGATGACTGCAAAAGGATAAAGCCTAGTCAGTCATTATTATCAGGCGAGGAAGATGATGACGAAGATGATCAAGGAGGTGACTCAGGAGAAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACATCGGCAGAAGATGAAATTTTGGTAGAACATGTTAAGAAATACGGATTGGGAAATTGGAATGCGGTGCAAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCAAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTACACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGCCGATCCAGAAAATGGCGACGCAAATGAAGCTAGCCAATGTGATGAATCAGAAAACTACAATATACCTGTTGTGGAATTTAAAGATTACAAATTCCACCCAGGTATGTCACCACCATGTTTTGATATTACCACCTTGATCGAGCGTCCCTCAAAGCGGCCTCTTGAGTCCAATATGATATACAGTGATTTGGGTGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTATTTGATCCGTACGGAAAATATCCTATGTTGGCTCCTCCATGTGATCCGAGTTTTTACACCGACGCTCAGTTTCATGGATACGATAACATTCTGGACGGTATTCATACCGTACCAAATGTCTCGTCTTCTGAGCCCTTATACGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACTTCACTTGAGTCTATCGACACAATGATTCACTCTTCTCCTAATGAGCCTTATCAGTCATCTCCGAATGAGCCGTATCAGTCATCTCCGAATGAGCCGTATCAGTCAGATCCAACTTCTCCAGATAGCAATCATTTCCTTGATACAATATTACACTCCAATGATGATTCTTTTCAAGAGAAAATTGAGAACACCGTGCCAAATGAAGCCGACAATAGTACACAGTGGAACATACTAGATGATCAGTCTGGTGCTTCATTTCTGCCATCTGACTATAATGCTCATCACATTAACATGTGGTCAATTGATCGATCCCACTTGGTCGAAACCACTCAAGATCATGGTAATTTGGATCAAATAGATTTTGCGCGCCCAGATGCTATGCTTGAATCCGATTGGCGCATGAAGAATAAATGA 1629 0.4273 MSTTSGGDDGRKALKGKKMMSLSSGDDSQMLKHNRPSSSSGDVDCKRIKRSESALLGEEDDQGRNVEGEGILRGMTSTSSVDNGHKKIKRSWSSSSSLDDDCKRIKPSQSLLSGEEDDDEDDQGGDSGEGEEGSLKKGTWTSAEDEILVEHVKKYGLGNWNAVQKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKADPENGDANEASQCDESENYNIPVVEFKDYKFHPGMSPPCFDITTLIERPSKRPLESNMIYSDLGGCSSSAAVQEVFDPYGKYPMLAPPCDPSFYTDAQFHGYDNILDGIHTVPNVSSSEPLYGSMRYELPSLQYLQTQQGSWSVSPLTSLESIDTMIHSSPNEPYQSSPNEPYQSSPNEPYQSDPTSPDSNHFLDTILHSNDDSFQEKIENTVPNEADNSTQWNILDDQSGASFLPSDYNAHHINMWSIDRSHLVETTQDHGNLDQIDFARPDAMLESDWRMKNK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4503 542 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 120 538 - -
Tpr3g4503 542 SMART sant 189 237 IPR001005 -
Tpr3g4503 542 SMART sant 136 186 IPR001005 -
Tpr3g4503 542 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 83 113 - -
Tpr3g4503 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 239 IPR017930 -
Tpr3g4503 542 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 120 538 - -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 1 139 - -
Tpr3g4503 542 SUPERFAMILY Homeodomain-like 135 231 IPR009057 -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 417 445 - -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 39 67 - -
Tpr3g4503 542 Gene3D - 192 238 - -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 22 38 - -
Tpr3g4503 542 Gene3D - 134 190 - -
Tpr3g4503 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 188 IPR017930 -
Tpr3g4503 542 CDD SANT 192 233 IPR001005 -
Tpr3g4503 542 Pfam Myb-like DNA-binding domain 137 184 IPR001005 -
Tpr3g4503 542 Pfam Myb-like DNA-binding domain 190 233 IPR001005 -
Tpr3g4503 542 CDD SANT 139 184 IPR001005 -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 252 271 - -
Tpr3g4503 542 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Tpr3g4503 542 MobiDBLite consensus disorder prediction 114 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4503 Tpr-Chr3 50167645 50170915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4503 121 537 MYB Transcription Factor Family AT5G06100 36.743 1.44e-65 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4503 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4503 K09422 - gmx:100800658 361.303