Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4501 ATGGTTCGCTCCAATGGCATCAAGCTTCTTCATTCTCTTTCTCCTAATCTCCTCCGTAACGCTATATATGGAGGAGTGCTTCAAAGAGGTTATAGAACATTGAATTCAAGATTTTGTAATCCTTCCAAAGTTATTGGAAATTCTTTTCCCAATGTTGGAGATGGTGTTAATTTGAAGAAGTGGGTGTTATTGGGAGCAGCGAATAATTATTTCGGGGCATCGAGATCAATTCATGGCTCGGCATCATTGGCACGAGATTTTTATGACGTTCTTGGAGTTAGTAATAAAGCAAGTTCTGATGAAATAAAGAAAGCATTCTATGGGCTTGCAAAAAAGCTCCACCCTGATGCAAACAAAGATGATCCTGACACTCAAAAGAAATTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGACGAGGAAAAGCGTGAACAGTATGATCAGGTTGGCCATGATATTTATCTAAAACAACAAAGCGGTGATTTTGGAGGCGATGGTGGCTTTCATAATCCCTTTGAGGATATATTCCGTCGTGGTTTTGACTTCTATCCTCAGAACATTGGCGGACAGGATGTCCAGACTTTTGTTGAACTTTCTTTTATGGAAGCTGTCCAAGGATGCACCAAAACTGTTACATTTGAAACAGAGGTGCTTTGTGACACTTGTGGTGGAACCGGGGCTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCAGGAGTGACACATGTACAAGCTGGCATGATTAGGATGGATGTTTCATGTGGTGCATGTAGGGGAACTGGCAAAATTGTAAAGAGTTTCTGCAAGTCATGCAGGGGTGTAAAGCTTAGCAAAGGAACAAAGTCGATCAAATTGGATATTAAGGCTGGGATTGACAACAATGAAACCCTTAAGGTTTTCAGAAGTGGTGGTGCAGATCCTGATGGAGATCGTCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTCATATTCATGTAGATACTGTTTTAAGTATCACTCAGGCAATTTTGGGCGGAACTATTCAGGTCCCGACTCTTACTGGCGATGTTGTTCTTAAGGTGCGTCCTGGAACACAACAAGGTCAAATGGTGGTTCTGAAAAACAAAGGGATCAAGGGCAAAAATTCTTATACATTAGGCAATCAATACGTTCATTTTAACGTCAGCATCCCAGTAAACCTAACAAAAAGACAGCGGGAATTGATTCAAGAGTTTCAAAAGGAAGAGCAAGATGAATCTTCTGATAAAGACAAAGCTGCTTCGGCTTCCGGTTGA 1320 0.4152 MVRSNGIKLLHSLSPNLLRNAIYGGVLQRGYRTLNSRFCNPSKVIGNSFPNVGDGVNLKKWVLLGAANNYFGASRSIHGSASLARDFYDVLGVSNKASSDEIKKAFYGLAKKLHPDANKDDPDTQKKFQEVSMAYEVLKDEEKREQYDQVGHDIYLKQQSGDFGGDGGFHNPFEDIFRRGFDFYPQNIGGQDVQTFVELSFMEAVQGCTKTVTFETEVLCDTCGGTGAPPGTRPETCKRCKGSGVTHVQAGMIRMDVSCGACRGTGKIVKSFCKSCRGVKLSKGTKSIKLDIKAGIDNNETLKVFRSGGADPDGDRPGDLYVTIKVREDPVFRREGSHIHVDTVLSITQAILGGTIQVPTLTGDVVLKVRPGTQQGQMVVLKNKGIKGKNSYTLGNQYVHFNVSIPVNLTKRQRELIQEFQKEEQDESSDKDKAASASG* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4501 439 Gene3D - 220 280 - -
Tpr3g4501 439 CDD DnaJ_C 191 409 - -
Tpr3g4501 439 ProSiteProfiles Zinc finger CR-type profile. 207 285 IPR001305 GO:0031072|GO:0051082
Tpr3g4501 439 Pfam DnaJ domain 86 148 IPR001623 -
Tpr3g4501 439 PRINTS DnaJ domain signature 88 106 IPR001623 -
Tpr3g4501 439 PRINTS DnaJ domain signature 106 121 IPR001623 -
Tpr3g4501 439 PRINTS DnaJ domain signature 123 143 IPR001623 -
Tpr3g4501 439 PRINTS DnaJ domain signature 143 162 IPR001623 -
Tpr3g4501 439 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 28 439 - -
Tpr3g4501 439 CDD DnaJ 86 140 IPR001623 -
Tpr3g4501 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 327 IPR008971 GO:0006457|GO:0051082
Tpr3g4501 439 Gene3D DnaJ domain 83 190 IPR036869 -
Tpr3g4501 439 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 28 439 - -
Tpr3g4501 439 Pfam DnaJ C terminal domain 195 406 IPR002939 -
Tpr3g4501 439 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 281 IPR036410 -
Tpr3g4501 439 SMART dnaj_3 85 143 IPR001623 -
Tpr3g4501 439 ProSitePatterns Nt-dnaJ domain signature. 128 147 IPR018253 -
Tpr3g4501 439 Hamap Chaperone protein DnaJ [dnaJ]. 83 433 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Tpr3g4501 439 ProSiteProfiles dnaJ domain profile. 86 151 IPR001623 -
Tpr3g4501 439 SUPERFAMILY Chaperone J-domain 85 185 IPR036869 -
Tpr3g4501 439 Pfam DnaJ central domain 220 279 IPR001305 GO:0031072|GO:0051082
Tpr3g4501 439 Gene3D - 191 322 - -
Tpr3g4501 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 417 IPR008971 GO:0006457|GO:0051082
Tpr3g4501 439 MobiDBLite consensus disorder prediction 420 439 - -
Tpr3g4501 439 Gene3D - 327 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4501 Tpr-Chr3 50156243 50163648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4501 79 148 C2H2 Transcription Factor Family AT1G74250 40.000 2.23e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4501 K03686 - gmx:100815834 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4501 3 50156243 50163648 Tpr3g4501 3 50156243 50163648 ECH