Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4500 ATGGCAGTAGCTTTGATTGGAGGTTCCTTTCTATCTGCTTCTGTTCAAACCTTAATGGACAAACTAGCTTCAAAAGATTTTCAAGATTACTTCAACAACAAAAACCTGAATATCTCACTCTTAAGACAATTAGAAACAACACTGTTAGCTTTTCAGGCTGTATTGGATGATGCAGAACATAAGCAAATCAACAATCTTGCTGTCAAACAATGGCTTGATGAGTTAAAGGATGCAATTTTCGACGCAGAGGATTTGCTTAACCAAATCAGTTATGATTCCTTGCGATGTAAGATGGAGAATATACAAGCTGAAAATATCACTAATCAGGTTCGAAACTTTCTTTCGTCTCCTTTTAAAAGCTTCTATGGAGAGATCAATTCTCAAATGAAGATCATGTGTCAAAGGCTTCAACTTTTTGCACAGCAGAAAGATATCCTTGGTTTGCAAACTGTGAGCGGGAGAGTTTCTCGTAGAATGCCTTCAAGTTCGTTAGTAAATGAATCTGTTATCGTTGGTAGGACCGATGATAAACAGAAATTAATGAATATGTTGTTATCAGATAGAGGTATAGGCAATAATATAGGCGTTATCGCAGTTTTGGGCATGGGAGGTGTTGGAAAAACAACCCTTGCTCAACTTCTTTACAATGATAAGGAAGTTCAAGAACATTTTGAGTTGAAAGCTTGGGCATGTGTGTCAGAGGATTTTGATATTTTGAGAGTAACCAAAACTCTTCTCGAATCTGTTACTTCGAGATCTTGGGAAAGCAACAATCTCGATTTCCTTCGAGTTGAATTAAAGAAAAACTCAATAGAGAAGAGATTTTTGTTTGTGTTGGATGATATGTGGAATCATAGTTATAATGATTGGGATGAGCTAATAAGTCCCTTCATTAATGGAAAATCTGGAAGTAGAGTGATCATGACAACGCGGCATCAAAAAGTTGCAGATGTTGCACATACATTTCCAATTCATAAATTAGATCCTTTATCTGATGAAGACAGCTGGTCTTTACTCTCGAAGCATGCTTTCGAAAGTAACGAATTTCATGAAACCAAACATATAGACCTAGAAGCAATAGGTAGGAAGATTGCAAGAAAATGTGGAGGGTTGCCAATAGCTGCTAAAACACTTGGAGGACTTTTACGTTCAAAGGTAGATCGAAAAGAGTGGACTGCAATTTTGAACAGTGATATATGGAACTTACCGAATGATAATATAATGCCTGCTTTGTTTTTGAGTTATCAATACCTTCCCTCGCATTTGAAAAGATGTTTTGCTTATTGTTCAATTTTTCCAAAGGATTATTTCATTGATAAGAAGCAATTGATTTTGTTGTGGATGGCAGAAGGTTTCCTTGAACATTCTCAAGGTGAAAATGCAGCCGAGAAAGTAGGTGATGATTACTTTGTTGAATTGTTATCCAGATCCTTAATTCAACAATATGATACACAACAATTTGTCATGCATGACCTTGTCAATGATTTAGCTACATTAGTATCAGGAAAAAGCTGTTGTAGACTTGAATGTGGTGATAAAATCTCTAAAAACATACGCCATTTTTCTTATAACCAAGAAGAGTATGACAATTTCAAGAAGTTTGAGATTGTCTACGATTGTAAAAGCTTGCGAAGCTTTCTGCCTATTGGCTCTTGGAGGGGAAAAAAGTACTTGTCTACAATGATGGTTCATGATTTGCTACCCTCATTTAGAAGGTTGCGTGTGTTATCATTATCTAATTATGCAAACCTCACCATACTTCCAAATTCAGTGGGTAGTTTGGTGCAATTGCGCTATCTAGATCTCTCCCACACTGAAATCAAAAGCTTGCCCGAGACAACATGTAACCTTTACAATTTGCAAACCATGCTTTTATCTAACTGCAGAAATCTCACTGAATTGCCAGTGCATATCGGAAAGTTGATCAGTTTACGTCACCTTGACATCTGCGGGACAAACATAAAGGAGATGCCAATGGAAATTGTTGGACTGGAAAGTCTTCAAACTCTTACCTTTTTCGTAGTGGGTAGGCAAAAAGTCGGGCTAGGTATCAAAGAGCTTCGAAAGTTCCCACACCTGCACGGAAAGCTTACCATCAAGAACTTGCATAACGTCATTGATGCAATGGAAGCATATGATGCCAATCTAAAAAGCAAAGAACAAATTGACGAGTTGGAGCTACAATGGGGTGAACAAACCGAAGACTCACGAGTAGAGAAAGATGTGCTAGATGCATTGAAACCATCAATAAACTTGAAGAAACTGAGCATTCGCTTGTATGGTGGGACAAGCTTCCCCACTTGGTTGGGAGATTCTTTGTTTTCTAATATGGTGTCCCTGCGCATCAATAATTGTGAATACTGCGTTACGCTTCCACCATTAGGGCAGCTACCTTCTCTCAAGTACTTATCAATTAGTGGTATGGCAATGTTGGAGACAATTGGGTCAGAATTTTATTATGTTCAGAGAGGAGATACAAATTCTTCATTCCAACCATTTTCATCCCTCGAACGCCTGGAATTTTGGTACATGCCAAATTGGAAGGAATGGCTTCCATTTGAAGGTGACAAATTTCCTTTTCCTCGTCTTAAAACTTTATGGCTATACCAATGTCCTGAACTGAGGGGACATTTGCCTAGCCATCTTTCTTCCATACAAGAAATTGAAATAAATGGTTGTCATCATCTCTTGCCGACACAGACTACTCTGCGTTGGCTCTCTTCAATCAAATGCATAACTATTATGGGCTCTCATTGGGATACTAAAGGGAGCCAGTGGTCATTACTTGAGAGTGATTCTCCGTGTCTGCTGCAGGATGTAAAAATATGGTGCTTCCATACTTTACTGTATTTGCCTAAGATGATTATAAACAACAATTGTCTTCGACACTTGACACTCAATGATATTCCTTCTCTTGTTGCATTTCCCGTTGATGGTCTACCTACTTCGTTGCAGTCACTTGTTATTCATCGGTGTCAGAATTTAACATTCTTGCCTCCTGAAACGTGGAGCAGTTACACATCACTTGTGACATTGGAGTTATGGAATAGTTGTCAAGAACTTACCGCCTTCCCACTGGATGGTTTTCCTGCGCTACAAAGTATCCACATTTATGGTTGTAAAAGTCTGGAGTCTATTTTTATATCAGACTGTTCTCCCCCTCGCTCGTCAACACTCCAATCACTTTCAATCAGTCGTTGTAAGGCACTGCCTCAAAAAATGGACAGCCTCACCGCTCTTGAACATTTATCTCTTTATGATCTTCCAAAAGAACTTAAGTTACCATTTTGTGAAGGTGCCTGCCTACCTCCCAAATTACGGTCAATTTATGTTGTATCTGCGGGAATAGCAACTCCGGTAACTGATTGGGGTCTCCAACACCTGAGCGCTCTTTCAAAATTGAGTATTGGTGGCGACGATGATATTGTTACCACCTTGTTGAACGAACGGTTGTTGCCTATTTCCCTTGTGTCTCTCACAATCACTCGTCTCTCTAAAATGAAATCCTTTGAAGGAATTGGACTTCGACACCTCTCTTCTCTTGAAAAACTTCAATTCCGATATTTCTCAAGGCTCAAGTATTTGACAGAAGGCACATTGCCTTGTAATCTCAAATCACTAAAATTTGAAAATTGTCCAAGACTCGAGTCTTTGTCAGAAGATAGTCTCCCTTCCTCTCTTAAGCGATTGATCATTAGGGAATGCCCTCTGCTAGAAGAAAGGTATGGAAGTGAGAGAGGAGAACATTGGTCCAAGATTGCTCACATACCTGTCATAAAAATAAATGACAAAGTGACAATTTGA 3804 0.3883 MAVALIGGSFLSASVQTLMDKLASKDFQDYFNNKNLNISLLRQLETTLLAFQAVLDDAEHKQINNLAVKQWLDELKDAIFDAEDLLNQISYDSLRCKMENIQAENITNQVRNFLSSPFKSFYGEINSQMKIMCQRLQLFAQQKDILGLQTVSGRVSRRMPSSSLVNESVIVGRTDDKQKLMNMLLSDRGIGNNIGVIAVLGMGGVGKTTLAQLLYNDKEVQEHFELKAWACVSEDFDILRVTKTLLESVTSRSWESNNLDFLRVELKKNSIEKRFLFVLDDMWNHSYNDWDELISPFINGKSGSRVIMTTRHQKVADVAHTFPIHKLDPLSDEDSWSLLSKHAFESNEFHETKHIDLEAIGRKIARKCGGLPIAAKTLGGLLRSKVDRKEWTAILNSDIWNLPNDNIMPALFLSYQYLPSHLKRCFAYCSIFPKDYFIDKKQLILLWMAEGFLEHSQGENAAEKVGDDYFVELLSRSLIQQYDTQQFVMHDLVNDLATLVSGKSCCRLECGDKISKNIRHFSYNQEEYDNFKKFEIVYDCKSLRSFLPIGSWRGKKYLSTMMVHDLLPSFRRLRVLSLSNYANLTILPNSVGSLVQLRYLDLSHTEIKSLPETTCNLYNLQTMLLSNCRNLTELPVHIGKLISLRHLDICGTNIKEMPMEIVGLESLQTLTFFVVGRQKVGLGIKELRKFPHLHGKLTIKNLHNVIDAMEAYDANLKSKEQIDELELQWGEQTEDSRVEKDVLDALKPSINLKKLSIRLYGGTSFPTWLGDSLFSNMVSLRINNCEYCVTLPPLGQLPSLKYLSISGMAMLETIGSEFYYVQRGDTNSSFQPFSSLERLEFWYMPNWKEWLPFEGDKFPFPRLKTLWLYQCPELRGHLPSHLSSIQEIEINGCHHLLPTQTTLRWLSSIKCITIMGSHWDTKGSQWSLLESDSPCLLQDVKIWCFHTLLYLPKMIINNNCLRHLTLNDIPSLVAFPVDGLPTSLQSLVIHRCQNLTFLPPETWSSYTSLVTLELWNSCQELTAFPLDGFPALQSIHIYGCKSLESIFISDCSPPRSSTLQSLSISRCKALPQKMDSLTALEHLSLYDLPKELKLPFCEGACLPPKLRSIYVVSAGIATPVTDWGLQHLSALSKLSIGGDDDIVTTLLNERLLPISLVSLTITRLSKMKSFEGIGLRHLSSLEKLQFRYFSRLKYLTEGTLPCNLKSLKFENCPRLESLSEDSLPSSLKRLIIRECPLLEERYGSERGEHWSKIAHIPVIKINDKVTI* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4500 1267 Coils Coil 41 61 - -
Tpr3g4500 1267 Gene3D - 14 131 - -
Tpr3g4500 1267 Gene3D - 153 322 IPR027417 -
Tpr3g4500 1267 SUPERFAMILY L domain-like 947 1240 - -
Tpr3g4500 1267 PANTHER DISEASE RESISTANCE PROTEIN RP 20 996 IPR044974 GO:0006952
Tpr3g4500 1267 PANTHER OS05G0414200 PROTEIN 20 996 - -
Tpr3g4500 1267 ProSiteProfiles Leucine-rich repeat profile. 596 617 IPR001611 GO:0005515
Tpr3g4500 1267 Gene3D Ribonuclease Inhibitor 551 925 IPR032675 -
Tpr3g4500 1267 Pfam NB-ARC domain 175 396 IPR002182 GO:0043531
Tpr3g4500 1267 PRINTS Disease resistance protein signature 196 211 - -
Tpr3g4500 1267 PRINTS Disease resistance protein signature 269 283 - -
Tpr3g4500 1267 PRINTS Disease resistance protein signature 368 382 - -
Tpr3g4500 1267 PRINTS Disease resistance protein signature 615 631 - -
Tpr3g4500 1267 Gene3D - 414 499 IPR036388 -
Tpr3g4500 1267 Pfam Rx N-terminal domain 10 102 IPR041118 -
Tpr3g4500 1267 SUPERFAMILY L domain-like 488 925 - -
Tpr3g4500 1267 Gene3D - 329 413 IPR042197 -
Tpr3g4500 1267 Gene3D Ribonuclease Inhibitor 936 1104 IPR032675 -
Tpr3g4500 1267 Gene3D Ribonuclease Inhibitor 1105 1244 IPR032675 -
Tpr3g4500 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 429 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4500 Tpr-Chr3 50147542 50153978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4500 193 814 WRKY Transcription Factor Family AT5G45050 22.123 1.74e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4500 - - mtr:MTR_3g032370 1546.95