Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4497 ATGGCTTCTCTACTCTCACAATGCAATTTCATTTCCTTAACAACTTACAACAACTTCAAACCCAAAACGACACTCCCTTCTTCCTTAGTAGTTGGAACTTCAACGACACGCCGTTTTAGAAGATACGTAACGGTTTCTGAACAAGCTACGGCGAATTCAGCTGCTGTTAGAAAGCTTTATGTTGGGAACATTCCTCGTACTGTTAGTAATGATGAACTTGCTCAGATTGTTCAAGAACATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCAGCAGTTGAGAAACTCAATGGCACTGAAATTGGAGGGCGTGAGATTAAAGTCAATATAACCGAAAAGCCTTTAACCACGGGAAGTGTGTCACTCCAGGCTGGGGAGTCTGAATTTGTTGATAGTCCCTACAAGGTATATGTGGGAAATCTTGCTAAGAATGTAACATCTGATAGCCTTAAAAGTTTCTTTGAGAAAGGAAAAGCTCTTAGTGCCAAGATTTCACGGGTTCCTGGGACCACAAAATCCAGCGGTTTCGGTTTTGTCACATTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACGATGCTTTGTTAGAAGGTAAAAAAATCCGTGTGAATAAGGCGTAG 696 0.4109 MASLLSQCNFISLTTYNNFKPKTTLPSSLVVGTSTTRRFRRYVTVSEQATANSAAVRKLYVGNIPRTVSNDELAQIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAVEKLNGTEIGGREIKVNITEKPLTTGSVSLQAGESEFVDSPYKVYVGNLAKNVTSDSLKSFFEKGKALSAKISRVPGTTKSSGFGFVTFSSDEDVEAAISSFNDALLEGKKIRVNKA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4497 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 231 IPR000504 GO:0003723
Tpr3g4497 231 PANTHER OS02G0815200 PROTEIN 24 231 - -
Tpr3g4497 231 SUPERFAMILY RNA-binding domain, RBD 52 135 IPR035979 GO:0003676
Tpr3g4497 231 SUPERFAMILY RNA-binding domain, RBD 151 231 IPR035979 GO:0003676
Tpr3g4497 231 SMART rrm1_1 58 131 IPR000504 GO:0003723
Tpr3g4497 231 SMART rrm1_1 157 229 IPR000504 GO:0003723
Tpr3g4497 231 CDD RRM_HP0827_like 58 135 - -
Tpr3g4497 231 Gene3D - 40 144 IPR012677 -
Tpr3g4497 231 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 24 231 - -
Tpr3g4497 231 Gene3D - 145 231 IPR012677 -
Tpr3g4497 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Tpr3g4497 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 129 IPR000504 GO:0003723
Tpr3g4497 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4497 Tpr-Chr3 50123985 50129162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4497 59 231 Eukaryotic Initiation Factors Gene Family AT3G16380 32.584 8.06e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4497 K13126 - gmx:100811197 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4497 3 50123985 50129162 Tpr3g4497 3 50123985 50129162 ECH